CI01000050_05300337_05306942 (SYP, SYPB)


Basic Information

Item Value
gene id CI01000050_05300337_05306942
gene name SYP, SYPB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5300337 ~ 5306942 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05300337_05306942.mRNA
TTCTTTGCCATCTTTGCGTTCTCCACCTGTGGCGGTTACTCTGGAGTGTTTCGACTGAGTGTGGAGTGTAAGAACCGCACAGAAAGTGACCTGAACATTGAGGTTGAGTTTGGCTACCCGTTCAGACTGCACCAGATATGGTTTGATGCTCCTACATGTAAAGGGCCAGAACCTGAACGTCTCTTTCTGGTGGGAGACAACTCTTCCTCTGCTGAGTTCTTTGTCACCATCGGTGTCTTTTCCTTCCTTTATACAATGGCAGCCATTTCTGTGTACATCTTCCTCATGGAGAAGTACCGCGAGGGAAACAAAGGCGCTCAGGCTGATTTTGTAGTGACAGCTATTTTTACGTTTATGTGGTTGGTGAGTTCAGCGGCGTGGGCCAAAGGTCTGTCAGATGTTAAGAGGGCAACTGACCCCGATGAGGTCATCAATCTCATCGCTGCATGTGATCGTGAGGAAAACCGCTGCAAAGAAATCCATGAGCCTGTGGTTTCTGGCCTGAACACATCTGTGGCGTTTGGGTTCTGTAATATGGTACTATGGGCAGGGAACCTGTGGTTCGTCTTCAAGGAAACCGGTTGGCTTGCAGCCTTTGCTGGCACTTACATGCCCTCTGGAGAGAAGCAGCCAGCACCAGACTCCTTGGGCCAGGGCTATGGACAAGAAGGTTATGGACAGGACCCTTACGCCAGCTCTCAGGGCGGGTACCAGCCAGAATACGGCCAACAGGGCGGAGGATATGAAGGCGGTGGTTACAACCAAGGAGTGTATGGTCAGG

Function

symbol description
sypb Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane; neuron projection; and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in presynaptic active zone and synaptic vesicle membrane. Is expressed in central nervous system; lateral wall spinal cord; midbrain; retinal inner plexiform layer; and retinal outer plexiform layer. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 96. Orthologous to human SYP (synaptophysin).
syp Enables cholesterol binding activity. Predicted to be involved in endocytosis; regulation of neuronal synaptic plasticity; and regulation of opioid receptor signaling pathway. Predicted to act upstream of or within cellular response to organic substance. Located in neuron projection. Implicated in non-syndromic X-linked intellectual disability 96. Biomarker of Alzheimer's disease.

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05300337_05306942.mRNA True 781 mRNA 0.51 5 5300337 5306942

Neighbor

gene id symbol gene type direction distance location
CI01000050_05220463_05237857 OPN7D coding upstream 61990 5220463 ~ 5238347 (+)
CI01000050_05160439_05203170 NA coding upstream 96964 5159917 ~ 5203373 (+)
CI01000050_05069414_05117314 FRMD3 coding upstream 183023 5069414 ~ 5117314 (+)
CI01000050_05034897_05045722 GKAP1 coding upstream 254380 5034897 ~ 5045957 (+)
CI01000050_05027317_05033248 CUNH9ORF64, C5H9ORF64 coding upstream 267035 5027317 ~ 5033302 (+)
CI01000050_05327777_05328382 PLP2 coding downstream 20835 5327777 ~ 5328399 (+)
CI01000050_05362253_05376134 PRICKLE3 coding downstream 55311 5362253 ~ 5377514 (+)
CI01000050_05382547_05383818 NA coding downstream 75101 5382043 ~ 5383866 (+)
CI01000050_05388158_05405937 NA coding downstream 81120 5388062 ~ 5406041 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A coding downstream 100740 5407585 ~ 5409417 (+)
G215474 NA non-coding upstream 12975 5285639 ~ 5287362 (+)
G215348 NA non-coding upstream 172378 5122705 ~ 5127959 (+)
G215358 NA non-coding upstream 210758 5066806 ~ 5089579 (+)
G215380 NA non-coding upstream 376501 4923602 ~ 4923836 (+)
G215332 NA non-coding upstream 446926 4810229 ~ 4853411 (+)
G215499 NA non-coding downstream 83007 5389949 ~ 5390319 (+)
G215500 NA non-coding downstream 96983 5403925 ~ 5404270 (+)
G215503 NA non-coding downstream 112218 5419160 ~ 5421264 (+)
G215511 NA non-coding downstream 148392 5455334 ~ 5455585 (+)
CI01000050_05529488_05530765 NA non-coding downstream 220633 5527162 ~ 5531422 (+)
CI01000050_04591548_04592778 NA other upstream 707288 4589926 ~ 4593049 (+)
G214717 NA other upstream 1192057 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 1343293 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 1491598 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 2434515 2852118 ~ 2865822 (+)
G215539 NA other downstream 322668 5629610 ~ 5631203 (+)
G215773 NA other downstream 1354246 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036754 sypb coding NC_007119.7 CM002892.2 49403668 ~ 49432061 (-)