G215503


Basic Information

Item Value
gene id G215503
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5419160 ~ 5421264 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU244476
CTTCGGTTCACTGGGAGCGACATGGCGACATCTCTTCTCTTCTCTGATGACGTGTTTGCTGGCATAAGGGCGGGACAACCTGTCACTCACATGAGATCCACCAATAGCAATCCACAACCATCCAGTCAATTCCAGATGGACAAAATCAAGTGCCGCCCTACATTTGTTCTTGTTCAAGAAGTTGTTTCACTCATCACAATAGGGAAGAAAAGACTATTGCAACTTCTGTTTCATGCCGACTTTAAATTTATACACAACCCTATCGTTCAAAAGTTCAGGGTCAAAAAATGTTTTTGAAAAAAGTCTCTTTTACTCACCATGGCTAATTTATTTGATCAAAAATACATTTGATACATTTTAAAATGTAATTTATTCCGGTGACTGTAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTTAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGACTTGCTGCTCAAATAGTATTATTATCAATGCTGAAAAAAGTTGTGCTGTTTCATATTTTTGTGGAAAAAAATTATACTTTTTTTAGGATTCTCAAACAGTAAGTTCAAAAGAACAGCATTTATTTGAAATATAAATATTTGTAACATTATAATTGTTTTTACTGTCACTTTTGAACAAAAATGGTATAATGAATTTTTTATAAAGGTTTCGTATCAAGAACTTTGTTGTTTTAATGAGGCTTTTTTCTTCAATATATCAGGACAGTATCATTTATACATTTGATATATTTATAAATAAAAATATGTACATTATAGAAGAGGCATATTCAGGTATGCCTGTATGTATAAATTGCATTATGTATTTTTCATTGACCCAAAAGCAGAATAATATGGACCACCCAAAAGTGGTCCATATTATTGTGCGCTTTATTCATATGACATTCTGAAGACACACTCTTTTTATGTTTTACGGTAGAAAGTCATGAGAGTTTAGAATATCATAAAGGTGAGTAAACGAAGACAGAATTTTCATTTTTAGCTGAACTATAAGTTGATGTTGCCATTCGATAGCCAAAAACACAAGTGTTTATTAGGAGACTCTGTAACCTTGTATCCCACTACAATACCAAATCCACAAAGACACATGCCTGACAATATTAGATTCACAAGATGCTGAACAGAATCCAACAGGCAGTATTTCATTCTGGATGCCACATGACTCACAAGACAATAAATGCTTATGTAAACCAAACATTCAGAACAATAAACAAAATGAACTAGACAAAGGCGCACACACACACACACATATACATAGCTGACGGGTTCTTTCACACTTTGCACTGAGCTATTCACACACTCACAGAAATGTGAACTGTTTCTCGGGTGCCTAACATGGTGACATGAGTGTGTGTGTGTGTGACTGACGTAACATTGGCTGCCATTACAAAGCTAGCGTGAACTATGAGATTCATGTGCTTCTAGATTATGTTCATGCATTTTGATAAAAGTGCTCAGAATATTTAATCCCAACTGTCCAAGAATCTTCTCAATCATCCGTGAAGATGCCGATAGTAGTGGCCCCTTTGTTAGCAGTTTTGCTATATGTTTGGATTGGACTGATTCTGCACACTGTGCAATGACAAATAAATTGTGCTTTTTCTAGCATGACCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244476 True 1631 lncRNA 0.35 2 5419160 5421264

Neighbor

gene id symbol gene type direction distance location
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A coding upstream 9743 5407585 ~ 5409417 (+)
CI01000050_05388158_05405937 NA coding upstream 13119 5388062 ~ 5406041 (+)
CI01000050_05382547_05383818 NA coding upstream 35294 5382043 ~ 5383866 (+)
CI01000050_05362253_05376134 PRICKLE3 coding upstream 41646 5362253 ~ 5377514 (+)
CI01000050_05327777_05328382 PLP2 coding upstream 90761 5327777 ~ 5328399 (+)
CI01000050_05529488_05530765 NA coding downstream 105898 5527162 ~ 5531422 (+)
CI01000050_05545206_05550365 NA coding downstream 122250 5543514 ~ 5550550 (+)
CI01000050_05774182_05793383 WRAP73 coding downstream 352918 5774182 ~ 5793898 (+)
CI01000050_05819139_05823958 NA coding downstream 397810 5819074 ~ 5823958 (+)
CI01000050_05845707_05846552 NA coding downstream 424015 5845279 ~ 5846840 (+)
G215500 NA non-coding upstream 14890 5403925 ~ 5404270 (+)
G215499 NA non-coding upstream 28841 5389949 ~ 5390319 (+)
G215478 NA non-coding upstream 106269 5279372 ~ 5312891 (+)
G215474 NA non-coding upstream 131798 5285639 ~ 5287362 (+)
G215348 NA non-coding upstream 291201 5122705 ~ 5127959 (+)
G215511 NA non-coding downstream 34070 5455334 ~ 5455585 (+)
G215527 NA non-coding downstream 137065 5558329 ~ 5558638 (+)
G215533 NA non-coding downstream 175664 5596928 ~ 5605133 (+)
G215551 NA non-coding downstream 190334 5611598 ~ 5612047 (+)
CI01000050_04591548_04592778 NA other upstream 826111 4589926 ~ 4593049 (+)
G214717 NA other upstream 1310880 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 1462116 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 1610421 3805143 ~ 3808870 (+)
G215539 NA other downstream 208346 5629610 ~ 5631203 (+)
G215773 NA other downstream 1239924 6661188 ~ 6665703 (+)

Expression


Co-expression Network