CI01000050_05545206_05550365


Basic Information

Item Value
gene id CI01000050_05545206_05550365
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5543514 ~ 5550550 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05545206_05550365.mRNA
CTTTAAAAGGGAAAAACCCCAGAGATTCACAACTTAAAAGGTCTCTGTCCGGTAGGCCTATGAAAATTTGGTATGAATCCGTAACACAGTCACGAATGTACACGTACTTTAACGTTGGGGCCCAGTCCGTTGGTGCACATACAAAGCTGAGGAGTTCTGAACAATCGCTCACAGTCAACAAGTAACGATAACGAGGCAATGTTGAAATCACTCACGGAACAAACTCACTGTTTGCAGTCCCGTTCGATCCACCCCTGGCACACGAAAAGTCCAGTCGAGCTGAGTCCAACGATGAAATGCAAGATGAGTTCAGTCCCAAACAATTTCAGTACGAGTCCACAGAGTCCACTAGCCGTTAAGACATCAGCACACACGGAGTAACTCAAACGATCGCGAACAGAATAACAGGGAAAAATAAAAACTCAACAGTCATTGGCCAGCAACAAAACACTTGCATTAAACATGCTTTCTCTCTGGACATGAACAAAAAATACATAGATGCATCATATTTTGAAATGAAAACAAAAAACAAAATACATTTTAAATTCTGTGTGTTATTTTCAACATGAATCATTCAACTAGACATTTTAGGGGTCCCTACATTCGGATCTGCATTAGAGGTCTGCATTCCCGCGGGACCCGATAAGATTTCTTGCTGCGCGGGATTCAATTTTGAATGAAAGGCGGATTGCGGTCGGTAACTTTAGTGTACTTTAGGCGGGAGTGGGCGGTCTGACAATAACCCGGTCGCTCCCGAGATGCTTTAACATCAGCGCATCTGTGCTTGAACTTAAAGTGAACAAAACTTTCTGCAGTGGTGGCGTTCACACAGTCACAAGTTCCCTGTCCTGAGAAACCTGACAAGATATGTTCTTTGCATTAGAGGTCTGCGCGAGTGCACCTTCAGAGCACATTCAACCTTTGTGATCAGATTTTGGAGGAGAGACGTTCTGAAACGGTCGTCAGTCAGCGTCATTCTGTTCTTGCGTGGATGTTAAAAAAGATTTCATTTTTCAGTATAGCTAGTAAGCCAACAGTTTTCGTGTATGTAATTTTAGCATAGCTTATAGTTTTGAGGGACATGTAGGCTATTTAATTTAGCCTATTTTTCTCTGTGATATTTAGCCTAATATTCTTTGTGACATTTTTTTCTCTGACATTTTTTAGGGTGTTGATAGCATCATAGACAAATAACAAATACAAATCTTGTATATGCAACATTTTATATTTGTTATCCCCAATCACTCTCTTTCTTTAGGGGAAGTTTAAACGCGAGATTCTGGAAACGATCTTTAGCGGGACCCGTCGGGTCGTGAAGAAAATCACTATATGCGGATAGCGGGTGAACACAGAGTGAATTTTAGGCGGGAGCAGGTGCGTGCGGAATAGAACCATTGCGGGAGCGGGACGAAAAAAAACAGTCCCGCGCAGACCTCTAATCTGCATCGACTTGAGAAAGCTAAATAATGCAGTGAAGAGAGAGAAATTTGTTCTTCCTACAACAGAGGAATTCATCTCTAAACTCTCAGGTGCCAAGATATTTAGCTCACTGGATGCAGCCAGTGGATTTAATCAAATCCCTCTTGAGGAAAGAGTAGCAGACTGACTACTTTTATCACCCTTTTTGACAGATACACCTTCAAACGTCTCCCGTTTGGGATCACAAGCACTCCAGAAATTTTTCAAAGAAAAATGACTGAGACATTGCAGGGGCTTGAGGGGGTGGCAATTTATATGGATGATGTTCTGGTTTTCGGAAAAACAGAAAAAGAACACGATGAGCGACTTGGAAAAGTACTCAAAGCCATGGAATCAGCTGGACTAAAATTTAACAAACAAAAATGCAGGTTTAGACAGAATCAAATTCGTTTTTTGGGTCACATCATCAATGTACAAGGGGTGAGGCCAGACCCCGGAAAAGTAAACAGCATTGCTAACTTTCCGGTACCCCAAAATGCACACAAACTCAAGTGGTTCCTAGGAATGGTGAACTACTTAGGGAAATACATCCCTAATTTAGCGACTGTTGGACAACCTATGTATGACCTCCTGAAAACCAAAGTAGTGTGGAACTGGGGTCCAAGTCAGGAGACAGCCTTTCAGAAAGTGAAAAATGCCTTGATGTGCGCACCTGTTCTCACTTTCTTTGATGCCAGCAGACCCACGGCAGTTTCTGCAGATGCAAGCAGCTACAGGGTAGGAGGCATCCTGCTTCAAAAAGATGATGGTGAGTGGAGGCCAGTAGCATACTGTTCAAGGTGCCTAAGTGATGCTGAAATGAAGTATGCACAAATAGAGAATGAGTGTTTGGCAGGGGTCTGGGCCTGCGAACGCTTTGAGAAATACTTGTATGGGCTAGACAGCTTCAGATTAATCACAGAGCACAAACCCCTCGTCCCACTCATCAACAGTAAAGACCTTGATAATGTTCCTCTCAGGTGCCAGAGGCTCTTAATGAGATTAATGTGGTACAGTTGCGTTGCAGAATATGCTCCTGGGAAGACACTGGCCGTAGCTGACGCACTATCACGGGGCCCAGACCACACATTGGAGAGCACGGACAGCCATAACGAGATAACTGCGTATATTGCTTCTGTTGTCAATAACCTCCCTGCAACTTCACAGAAAATGGAGCGGATCAGGATAAACACAGAATCGGAGAGCCAGCTGCAGTCAGTCCTCTGGTTTGTTAGGAATGGCTGGCCAGAGTATACAGCAAGCACACCTGAGGCCATCCAAGAGTATTTTCAGGTGAGAGGAGAGCTGTCTGAGTTTCAAGGCTTAGTCGTGAGAGGCAAACGTATAGTTATTCCTACCTGTATGAGGAAGGAAATCCTGGATAGAATCCATGATGGTCATCAAGGCCTACACAGGTGCCGTGAAAGGGCTTACCAGGCAGTATGGTGGCCTAACATCTCACAGGACATTAAACAGCATGTGCAGGAGTGCTCATACCGCATCGAGATGAGGGCGGCACAACGAAAGGAACCGTTGATTCCAAGAGGCAAAGTGCAGATGTGGGTTTTCCCAAAGAAAAAGAATGCACTTATACTAGACAAAATCAAACATGTCAACATCAGGAAACACATGCTACCACCAGCAGACCTCACCACTGGTGTGTTGTAATTGTAGGCGAAAATGCAAAATATGGCAATGAGTAAAATAATTATACATATGGCAGAAACTAAGACAGCGATGGAGGGGATTTCTGTGAACTGAAGATAGACAACAGAACGTGTCTTACATGTTGTGCTGCCTTCATCAGACCATTCATTCTCTGCACATGGAAAACAGGTATAGGGGTCCCCTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05545206_05550365.mRNA True 3311 mRNA 0.44 2 5543514 5550550

Neighbor

gene id symbol gene type direction distance location
CI01000050_05529488_05530765 NA coding upstream 12092 5527162 ~ 5531422 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A coding upstream 134097 5407585 ~ 5409417 (+)
CI01000050_05388158_05405937 NA coding upstream 137473 5388062 ~ 5406041 (+)
CI01000050_05382547_05383818 NA coding upstream 159648 5382043 ~ 5383866 (+)
CI01000050_05362253_05376134 PRICKLE3 coding upstream 166000 5362253 ~ 5377514 (+)
CI01000050_05774182_05793383 WRAP73 coding downstream 223632 5774182 ~ 5793898 (+)
CI01000050_05819139_05823958 NA coding downstream 268524 5819074 ~ 5823958 (+)
CI01000050_05845707_05846552 NA coding downstream 294729 5845279 ~ 5846840 (+)
CI01000050_05881217_05905972 MFN2 coding downstream 330667 5881217 ~ 5906281 (+)
CI01000050_06086847_06251892 PRDM16 coding downstream 536297 6086847 ~ 6251892 (+)
G215511 NA non-coding upstream 87929 5455334 ~ 5455585 (+)
G215503 NA non-coding upstream 122250 5419160 ~ 5421264 (+)
G215500 NA non-coding upstream 139244 5403925 ~ 5404270 (+)
G215499 NA non-coding upstream 153195 5389949 ~ 5390319 (+)
G215474 NA non-coding upstream 256152 5285639 ~ 5287362 (+)
G215527 NA non-coding downstream 7779 5558329 ~ 5558638 (+)
G215533 NA non-coding downstream 46378 5596928 ~ 5605133 (+)
G215551 NA non-coding downstream 61048 5611598 ~ 5612047 (+)
G215556 NA non-coding downstream 69931 5620481 ~ 5620689 (+)
G215541 NA non-coding downstream 70951 5621501 ~ 5629365 (+)
CI01000050_04591548_04592778 NA other upstream 950465 4589926 ~ 4593049 (+)
G214717 NA other upstream 1435234 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 1586470 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 1734775 3805143 ~ 3808870 (+)
G215539 NA other downstream 79060 5629610 ~ 5631203 (+)
G215773 NA other downstream 1110638 6661188 ~ 6665703 (+)

Expression


Co-expression Network