CI01000050_05819139_05823958


Basic Information

Item Value
gene id CI01000050_05819139_05823958
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5819074 ~ 5823958 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05819139_05823958.mRNA
CTATAAAAGTTCAGTCGACTTGTGATAAAAGTTTATGACAGAACATCAGAGAGACATCTGGAGCAATGGGGCAGTGTAAATCTCGCAGCTACATTGTAGAGCAAGATGCTCCTGCGTGTATGTCACCAACGCCAGTACCAGAGAGAGTAGAAAAGAAGAAAGGGAAGTTATTTAGATGGGCTTTTTCTCGGAAATCCAAGAAAACTAGCAACGAAGCCCAACAGAGTCAGTGCGGAAATGAGAGCAGTCAACCGCCTCAGAGATGCTTTGATGGTGAAGTTGAACAGAAAAGCAACAACACCCAGAGCACTTCAAAGAACAGGCGTGTGTCTTCTCTCAACGCTGTCGAGGACGTTAATGAAGACATCAACACTCACAGCAACAACAACATTGTTCCGTCACTGGACAAAGCTGAAGTGAACAACAATCCAGCGCACAGCCGTGCGTGTTCCCTCACCGCTTTGGAGAATGTTAACGAAGACATTCCCAAAGCTGAAGAGAACAACAATTCAGTGCACAGCCGTGCGTGTTCCCTCACCGCTTTGGAGAACGTTAACGAAGACGTTCCCAAAGCTGAAGAGAACAGCAACACTAACAACACTTCAGTGTACAGCTGGCACAACTGCGTGTCTTCCCTTAATGCTGTGCAGAGTGTTAGGGAAGACATTCCCAAAGCTGAAGAGAACCTCAACACTGACGACAACACTTTAGTGTACAGCTGGCACAGCTGTGTGTTTTCCCTCACCACTGGGCACGATGTTGATATTCCCGGGCAAGAGCAAGGGGGCATCAGCACGAACAGCAGTCCTTCTACATCTGAGTCATCTGTGGAAAACAACAGCACTCCTTTGCCATCGGACGCCATTCCATGGAAAAATGAGGATGAAATGATCTATTTAAGTTTAAAGGGAAAGAGAGGTAACGTCGAACAGCACTATGAAATTGGTAGAATGCTGGGTCAAGGAGCATTTGGAAATGTCTTCGAAGGAACCCGTTTGTCCGATTCACGAAAGGGACTATTTGGCAGATCCCTTCCAAAAGAGGTCACTTTGATGATTCGTCTGAACAAAGGCCCCAGAGTTCCTCAAATAATAAATCTGCTGGACTGGTATGAGAAACCAGAAGGATACATACTGGTCTTAGAGCGGCCCACTCCATGTACAGATTTGAGGAATTTTGTAATGCAGCATGGTGGCAAAATCAGTGAGTCAAAAGCGCGAGTTGTGATGCGTCAGGTCGTCACTGCTGCAAGAATATGCAGTGAAAAGGGTGTCTTCCACAGCGACATCAAGTTGGAAAACCTGCTCATCAACCAAACCACCATGCAGGTGAAATTAATAGACTTCGGTTGTGGTAGACCCCTGAAGAATTCTGCTTATTCAACGTTCAGTGGCACAAGAGTTTACGCTCCCCCTGAGGCTTTCCGAAGATGGTACCACGCCAAGCCTGCAACAGTGTACTCTTTAGGCGTACTCTTGTTCAAGATGCTGTGTGGGAAGTACCCTAGCAAGCTGAATCCTCAGGCCTTTGCCTGGACCTTGAACAGAGCAAAAATTTCCAAAGGTCTTAGTGACAGCATCTTAGTGATAGCAAATCTTCAG

Function

NR:

description
LOC562179 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05819139_05823958.mRNA True 1601 mRNA 0.46 5 5819074 5823958

Neighbor

gene id symbol gene type direction distance location
CI01000050_05774182_05793383 WRAP73 coding upstream 25176 5774182 ~ 5793898 (+)
CI01000050_05545206_05550365 NA coding upstream 268524 5543514 ~ 5550550 (+)
CI01000050_05529488_05530765 NA coding upstream 287652 5527162 ~ 5531422 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A coding upstream 409657 5407585 ~ 5409417 (+)
CI01000050_05388158_05405937 NA coding upstream 413033 5388062 ~ 5406041 (+)
CI01000050_05845707_05846552 NA coding downstream 21321 5845279 ~ 5846840 (+)
CI01000050_05881217_05905972 MFN2 coding downstream 57259 5881217 ~ 5906281 (+)
CI01000050_06086847_06251892 PRDM16 coding downstream 262889 6086847 ~ 6251892 (+)
CI01000050_06261124_06264271 NA coding downstream 437166 6261124 ~ 6264830 (+)
CI01000050_06269145_06275358 NA coding downstream 445187 6269145 ~ 6275358 (+)
G215536 NA non-coding upstream 20821 5795388 ~ 5798253 (+)
G215588 NA non-coding upstream 99621 5718964 ~ 5719453 (+)
G215544 NA non-coding upstream 181535 5634150 ~ 5637539 (+)
G215541 NA non-coding upstream 189709 5621501 ~ 5629365 (+)
G215556 NA non-coding upstream 198385 5620481 ~ 5620689 (+)
G215631 NA non-coding downstream 1261 5825219 ~ 5825659 (+)
G215645 NA non-coding downstream 13306 5837264 ~ 5837596 (+)
G215646 NA non-coding downstream 13683 5837641 ~ 5837855 (+)
G215641 NA non-coding downstream 15298 5839256 ~ 5840153 (+)
G215651 NA non-coding downstream 50306 5874264 ~ 5874863 (+)
G215539 NA other upstream 187871 5629610 ~ 5631203 (+)
CI01000050_04591548_04592778 NA other upstream 1226025 4589926 ~ 4593049 (+)
G214717 NA other upstream 1710794 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 1862030 3931890 ~ 3957044 (+)
G215773 NA other downstream 837230 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location