CI01000050_06086847_06251892 (PRDM16)


Basic Information

Item Value
gene id CI01000050_06086847_06251892
gene name PRDM16
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6086847 ~ 6251892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_06086847_06251892.mRNA
GATGACAGTGAGGCAGTAGACAGCATGTACGACACAGAGCCCAATCTCGTGACTGGCGAGAGCGCGGAAGAGGAGACAGAAGACAGCATCATGTCCCCCATTGCGGTGGGGCCCACGTCCCCTCAGCCCTGCAATGAGGACTTCACTCCTAAAGAGGGCTCACCCTATGAGGTGCCCGTCTACATTCCCGATGATATTCCCATCCCTGCTGACTTGGAGCTCCGCGAGTCGTCTGTTCCAGGGGCTGGCCTTGGGATCTGGGCTAAAGTCAAAATTCGGATGGGAGAACGCTTCGGACCATACAACGGACTGCAGAGCGCCACGGTAAAAGAGACCACTTATGGATGGGAGCAAATGCTGAATGATCATGAAACGTCGTCTCAAGACAGCTGTATCAAAAAGGTAATGGACAACATGGGCAATGTGAAGTTCTGTCTGGATGGGGCTCTGGAAGCCAGTGGGAGTTGGCTCAAATATGTGCGCACAGCTCCTTCCCATGAAGAGCACAACCTGGTCATGTGCCACATCAGCGAAGATCAGATCTATTATAAAGCTATTAGAGATATTGAAATAGGGGAGGAGTTACTGGTTTACATGAAGGACGGAGTTTTCCCCGAGGGCTCAATGGCACCGAACCTGGAAGATGAGCAGATGTACCGCTGTGAACACTGTGATGAGCTCTTTACATCAAAGCTGGAGTTACGGCGGCATCAGAAATACTCCTGCAGTAGCAGCAACTCTATCTTTGACTCGCTAAGCGAAGACTTCAAACAGGAGCGTGAAGACAGTGATGAGCCAGTGCACGAGTGCAAAGACTGTGAAAAGATCTTCCCTAGCGAGTACAGTCTCGGGCAGCATATGATCGTGCACACAGAAGAGAGGGAGTATAAGTGTGACCAGTGCCCCAAAGCTTTCAACTGGAAATCCAACCTCATTCGCCATCAGATGTCACATGACAGTGGCAAGCGCTTTGAGTGTGAAAACTGTGATAAGGTGTTCACAGACCCCAGCAACCTCCAGCGCCACATCCGCTCTCAGCACGTCGGTGCCCGAGCCCACACCTGCCCTGAGTGTGGCAAGACCTTTGCCACCTCCTCGGGCCTCAAGCAGCACAAGCACATACACAGCAGTGTCAAGCCTTTCATCTGTGAGGTGTGTCACAAATCGTATACCCAGTTCTCTAACCTGTGTCGTCACAAGCGGATGCATGCAGACTGCCGCACACAGATCAAGTGTAAAGACTGTGGGCAAATGTTCAGCACTACCTCCTCCCTCAACAAGCACCGGCGCTTTTGCGAGGGCAAGAACCATTATAATCCCGGAGGCATATTCACACCGGGCATACCAATGACATCCAGTCCCATTTTAGGCAAATCCAAGTCTCATCCTGGCTTGAACCATGGTGGACTTGGCTTCAGTGATTACTTCTCATCCAGGGCACATCATGCAGGTTTGCCCTTTTCCCCAGCACCCCCTGCATTCCCAGCCATTTCCCATGGCTTCCCAGGAATCTTTCCCCCATCACTATATCCTAGACCGCCATTGTTACCTCCTAGTCCACTGCTCAAGAGCCCACTGAGCAACAGTCAAGATGGGAAGCTGCCTCCTCTTGATGCTCCTACTCTTTCAGTGGTTTCATCCATGCACAACAGCAATGGCAATGTAGGAAGTGGTCTCAGCAGCCAGTCAGAGGAGAACCGAGAGTCCAAACTGGACTTGTCATTCTCAGACAACAAGAATAAAGTGAAGATGAACGACATGTCTGATGGTAGTGACTTGGAAGATGTTAACACATCTAGCGGCACAGATCTGGACACCACCACTGGCACTGTGTCTGGCTCCGACTTAGAAAGCGAGGCAGAGAGCGAACGGGAGAAGAGCAGGAGGAAACCGGTGCAGGAGAGCAAGCAGGATGAAGTGAGCAGCAGTTCGGTGTCTGTCTCCAGTTCAGGGAACCTCCCTTGTGAGCGCCCTTTCCTCTCCTCCCAGCATTCCTTTTTCCCACCACCAGAAGAGCAAGCACTTCCACCCTCCGGGGCCACCACTGACTCCATTAAAGCCATTGCCTCCATTGCAGAAAAGTACTTTGGCCCGGGATTCATGGGCTTGCAGGAGAAGAAGATGGGCTCCTTAAACTACCATTCCATGTTTCCTTTCCAGTTTCTGCCCAACTTCCCACATTCCTTGTACCCATTCACAGACAGAGCACTCAATCCTGGCATGTTCTTCAAACCTGAGCCTAAATCCCCTCGTGAGCACATACAGAAATTACCTACAGCCACTGGTGCGGATTCACCCTTTGACCTAACCACCAAACCCAAGGAGGTCAAACCTCTCCCTCCACCCCCCAGCAAGCCAGCCTTGCCATCCAACGCCCTCCTGGCCCCTGGCGAGGAACAGCCTCTGGACCTTAGCATAGGCAGTCGAAGCCGAGCCAACCAGAATGGTGGCACACATGAACAGCGCAAGAATCACGTCTATGGCGCAAACTGCAAAGCAGCTAAAGATGAACACCCAGCACTAACTCAGTCCCAGAACTTGCACCAGCCCCAGATGCCTCAGCCGCAAGTATCCCTTCCCCAGCCACCTCCTCCCCAGCAGCAGCCGTCGCTCCACTACGCCAAGCCCTCGCCGTTCTTCATGGACCCCATCTACAGCAGGGTGGAGAAGAGGAAGCTAATAGACCCAGTAGGAGCTCTAAAGGAGAAGTACCTGAGGCCGGCACCACTACTTTTCCATCCTCAGGTGTCTGCGATGGAAAACATGACTGAGAAGTTGGAAAGCTTTAGCGCTCTGAAACTGGATGCTCCCAATTCCCTCCAGCACCCCTCACACCATCTTTTTAACTTCCGCTCCCCGCCTCCCTCTCTCTCCGATGCTATCTTACGCAAAGGCAAGGAGCGATACACCTGCAGGTACTGTGGGAAAATCTTTCCCAGGTCAGCTAATCTTACAAGGCACTTACGAACACACACAGGAGAACAACCCTACAGATGTAAATACTGTGACCGCTCATTCAGCATCTCCTCCAACCTCCAGCGACATGTTCGTAACATTCACAACAAGGAAAAGCCGTTCAAGTGCCACCTCTGTAATCGCTGCTTCGGTCAACAGACCAATCTGGACCGCCACTTAAAGAAACATGAACATGAGAATATTCCAGTGAGTCAGCAGTCTGGGATCCTCTCCAATTTAGGAACAAATATTTCCTCACCGAACTCTGAGTCTGACAATCATGCACTTTTGGATGAGAAGGAGGACTCGTATTTCTCAGAGATTAGGAACTTCATCTCCAATAGTGAGCTGAACCAGGCCTGTAGCTCCTCGGAGAAAAGGTACGAGCTTGCACGCATGCACAAACACACACATGGACAGAAT

Function

symbol description
prdm16 Predicted to enable metal ion binding activity. Acts upstream of or within several processes, including cardiac muscle cell proliferation; embryonic cranial skeleton morphogenesis; and hematopoietic stem cell differentiation. Is expressed in several structures, including hindbrain neural rod; nervous system; pectoral fin bud; pronephric duct; and stomodeum. Orthologous to human PRDM16 (PR/SET domain 16).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_06086847_06251892.mRNA False 3378 mRNA 0.52 13 6086847 6251892

Neighbor

gene id symbol gene type direction distance location
CI01000050_05881217_05905972 MFN2 coding upstream 180566 5881217 ~ 5906281 (+)
CI01000050_05845707_05846552 NA coding upstream 240007 5845279 ~ 5846840 (+)
CI01000050_05819139_05823958 NA coding upstream 262889 5819074 ~ 5823958 (+)
CI01000050_05774182_05793383 WRAP73 coding upstream 292949 5774182 ~ 5793898 (+)
CI01000050_05545206_05550365 NA coding upstream 536297 5543514 ~ 5550550 (+)
CI01000050_06261124_06264271 NA coding downstream 9232 6261124 ~ 6264830 (+)
CI01000050_06269145_06275358 NA coding downstream 17253 6269145 ~ 6275358 (+)
CI01000050_06302230_06302696 NA coding downstream 49843 6301735 ~ 6302764 (+)
CI01000050_06307476_06308324 NA coding downstream 55584 6307476 ~ 6308696 (+)
CI01000050_06311242_06312395 NPPA coding downstream 59279 6311171 ~ 6313430 (+)
G215687 NA non-coding upstream 113301 5973320 ~ 5973546 (+)
G215679 NA non-coding upstream 143880 5942747 ~ 5942967 (+)
G215656 NA non-coding upstream 168927 5917606 ~ 5917920 (+)
G215653 NA non-coding upstream 176892 5909722 ~ 5909955 (+)
G215651 NA non-coding upstream 211984 5874264 ~ 5874863 (+)
G215722 NA non-coding downstream 20255 6272147 ~ 6272384 (+)
G215728 NA non-coding downstream 27337 6279229 ~ 6279465 (+)
G215702 NA non-coding downstream 106681 6358573 ~ 6358830 (+)
CI01000050_06413155_06428371 NA non-coding downstream 156610 6412512 ~ 6428983 (+)
G215774 NA non-coding downstream 454118 6706010 ~ 6707922 (+)
G215539 NA other upstream 455644 5629610 ~ 5631203 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 677199 5407585 ~ 5409417 (+)
CI01000050_04591548_04592778 NA other upstream 1493798 4589926 ~ 4593049 (+)
G214717 NA other upstream 1978567 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 2129803 3931890 ~ 3957044 (+)
G215773 NA other downstream 409296 6661188 ~ 6665703 (+)
G215667 NA non-coding downstream 29566 6171014 ~ 6172887 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002200 NA coding CM030136.1 CM030136.1 6797887 ~ 6824699 (-)