G215544


Basic Information

Item Value
gene id G215544
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5634150 ~ 5637539 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU244528
AAAAAAAACTTCTCTAAAAGGTGTGTGAAAGCAAAAACCAGCATTCATGATGTTTAGTCATTTGCATTTGAATGTGGCATGTCTGATATCCATATACACAGACTAAGACACAACTATCTGTTCCCATTGACATTTTTATTTAATATCCTCCTTTTCAGAATTTTCACTGTCGCATAAAAACAGAAGGAATACGGTGCTCGATAACATGAAGAAAAAAGGATGAAGTGATGGCATTCCAGTATAGATAAGACTTTTTTGTTGTTGTCATTATTTTCTCCTGACATGGGCTGTAATACACGCTACAACACAATAAAGACTTCAACGTCAGACTACTTAGCCGCACCGCTAGGTGCATAAGAGTACTATGAGCACTACAGTCAGATTGCATAGGTCAGCCACAGTAAAACAAGCAAAGGGAGGAAAAAGAAAAGAGAAACTGACAACAAAGAAAACAGTCACATAAACATAATATTGACAACACACTCTCATGGTAATTTGTGACCATTTTATGATTTGGCTAATTCGAAAGAATTCATACAATGTCATTCATAGGTTTTCGTACGATCTGCTTATGTCACAATGATGGTAAGGTTTAAACAACGCTATCTCACGACCAATTTGTACATATTTTACGAGGTGGCTAATTTGTTCGACCTCACTCGTATGAATTTATACGATTTGTCTAAACCCCAGTGATGGGTAGGTTTAGGGGCGGGGTTAGGGGTAGGTCATTCATACAAATTCATGCGCATTTGACAATTCGTAAAAAATACGTACGATTTTGAAAAAAAAAACGTACTAATTCGTACAAACGAATTAGCCACCTCGTAAAACACGTACAAACTGCCATGAGATCGGTTTGGTTTAAAGGTGGGGTGGACCGTCCTGCTTGTTTTATATTTTTCTAAAAATCGTGTGTTTCCATATGAATCACACTGTACAATTTCATACGAAATCACCAACTCGTAAAATAGTTACGTATTCTCATGAGATCGGGTTGAATATTACACAACAATGTTCTACTGATGCAACATTTGTACAAGCTTTGGACAAAACAATGACTCAAAATAAAACAATACTCTTAGCATTTAACAAAAAACATTGAAGTACACTATAAGAAGTTACATCTCAAAATAAATAATTGTGTATTATTACTGCTTCCGCACATCTAATTATGAAAATTCAAACATCATACATATACATACAGACATGATTTCTTAAATTGAGCTGTTTTATGTTTGATATGTGTCTGTAAAATGTGACTTTGTAAAGATTTGTGAAGAGTCAGTGTCGACATGTCTGATATGTGCTGCCTAGACACCACTTTAACGTCAGCTTCAAGATAGTGATAGTCCGATATATAGGCCAATATTTGACCATTCTGAGATATTGACAATTGTTGAAAAGTTCACTTGAAGGATAAGGTATTTCTGTTGTCAACTTTTTATTAAATTTTGAGTGCATCTGGAGGTAAGTAAGTGTTTATTTAATGTCAGTCATTTTAATGTCTCAATTTGTTAATATCAGCTTTATATATACTCTTAAAAATAACGGTTCCAAAAGGTGGTTTTCGCAGTGATGCCATGGAAGAACCATTTAGTATTCCCTAAAGAACCTTTCATTGAGCCAATCTCAATGAAAGGTTTTGCTGTGAAAAAAACGTTTTGGTGTTTTTCTTGGTGTGAAGAAAATTTTAAAAATCTAAAGAGTGCTTTTCCACTATAAAGAACCTTTTATGCAATGGAAAGGTTCCATGGATGTTAAAAGGTTCTTCATGGAACCATAAATGCCAATAAAGAACCTTTATTTTTAAGAGTGAAAGACCTGCTTTCTAGATAAAGGGTTGCGCACTTTTTGTCCAATGAATTTCCGTCACTTTTCCACGACATTTCAAGTGATTTCTGGAAAGGATTTTTAAAAATTAGTTTGATTCATACGATAGCAAATGAACCATTCAGGCTGATTTGTGAACTAGTTTGAACGCTGTCTTTGGACATCACAATTAGTCTATAGAAGAGCAATATCTAGCTGATGAAGTACTAGTTAGGCGTATCTAGGAAAAACAATTCACTGTGGTAATATACATGACTTCCAGGCCCAGTAAACACAACTTTAAAATCTAGTTTTTCCACAACTGTGAGGACCCTGTCAATTTTGGTATTGCCTGTTGAAAAGCACAATTACTTATTTAGGTTAGATTTTCCAGATGTAACTGAATGAATCATTGCGTGTTTTATTTGAATCTCTCATTTCTGGTAAACGTCACATGGCAGACGAGACCTCAGGAGGAGCAGACCGTCATAGGCTCAGTCCAAACACATTTACTCACAGTTAACTTACAAAATAAACATATCTGTCTTATTGAAATTTTAAGAGATTAAGATTCAAAATAGAGGTTATTCAAGGAGGTAATGGATAAAAATAAATGCTGCCTACAGGCACAGCTCATGAGGTTTTGGAACAGCTTATATTTACATTTATCATTTAGAGCTCGATGGATGAAATGTTACTGAACACTGAATTTCTTCAGAACTCTGATATTCTGATCTGTTCAAGTTCAACAGGCAAAATGTGACAAAAGAAAATCCAACTGACAGAAAAGCAAATTTGACAACTTTGTGCTCTAACATACAGATAAATAATCTTTATCTTATAATATTTATCTTGAGAATAATACACATTTACACAGATTCTCAGTTTTTACATTCATCCTATACCATCACAGCCTAATTTACCCTCAATATGATGCATGCTTCCTTTTCATCTACAGATTGCATTTATCCTTTATGTGTTTTAAAAGGGGACAATGCATAACTGGATCGAAATTATAAATATTAAATTTACACTATATTGGTAGTACAGGGCATAATAAGTGTCCCACGTATGTCAGATATAGCAAAAAGCAAAGAAAAGAAGCAAGGGGTATGAATGAACAAACAAACAAATAAAAAAAAAAAAAGACAAAAAGGAAGGAGATGAGACAGAATGACAGGAAAAAATAAATGACAGGATCAAAGAACATCACAGAGGAATGAAATTCAAGATGATTAATACTGTGACAGATTATAACGACTGCAAAGGGAAACATCTGTTAAATGTGTGTTCATTTACAGCAGTTTATACATTTATCTGTGATGTTGCCTGTCTAGAACTTTGCAGGATAATCTAAATCTAATGTAAACGTGCATGAGAAAACTTTAAATGCAACTTCTAAGGGCCAAAACATACTCGGCATAAGTATGTGAACGCTAACAGTTCTAGACACTAAAGCTCCTGTACTGTTTTAATGGCACAGACATTTTAAGGTAACCATCACCTTTTTCAGGACTATGGTTTGTTACCATCAGAACACTTGCTAACAACATGCTAGCAGTCCCTAACATGTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244528 True 3390 lncRNA 0.34 1 5634150 5637539

Neighbor

gene id symbol gene type direction distance location
CI01000050_05545206_05550365 NA coding upstream 83600 5543514 ~ 5550550 (+)
CI01000050_05529488_05530765 NA coding upstream 102728 5527162 ~ 5531422 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A coding upstream 224733 5407585 ~ 5409417 (+)
CI01000050_05388158_05405937 NA coding upstream 228109 5388062 ~ 5406041 (+)
CI01000050_05382547_05383818 NA coding upstream 250284 5382043 ~ 5383866 (+)
CI01000050_05774182_05793383 WRAP73 coding downstream 136643 5774182 ~ 5793898 (+)
CI01000050_05819139_05823958 NA coding downstream 181535 5819074 ~ 5823958 (+)
CI01000050_05845707_05846552 NA coding downstream 207740 5845279 ~ 5846840 (+)
CI01000050_05881217_05905972 MFN2 coding downstream 243678 5881217 ~ 5906281 (+)
CI01000050_06086847_06251892 PRDM16 coding downstream 449308 6086847 ~ 6251892 (+)
G215541 NA non-coding upstream 4785 5621501 ~ 5629365 (+)
G215556 NA non-coding upstream 13461 5620481 ~ 5620689 (+)
G215551 NA non-coding upstream 22103 5611598 ~ 5612047 (+)
G215533 NA non-coding upstream 29017 5596928 ~ 5605133 (+)
G215527 NA non-coding upstream 75512 5558329 ~ 5558638 (+)
G215588 NA non-coding downstream 81425 5718964 ~ 5719453 (+)
G215536 NA non-coding downstream 157849 5795388 ~ 5798253 (+)
G215631 NA non-coding downstream 187680 5825219 ~ 5825659 (+)
G215645 NA non-coding downstream 199725 5837264 ~ 5837596 (+)
G215646 NA non-coding downstream 200102 5837641 ~ 5837855 (+)
G215539 NA other upstream 2947 5629610 ~ 5631203 (+)
CI01000050_04591548_04592778 NA other upstream 1041101 4589926 ~ 4593049 (+)
G214717 NA other upstream 1525870 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 1677106 3931890 ~ 3957044 (+)
G215773 NA other downstream 1023649 6661188 ~ 6665703 (+)

Expression


Co-expression Network