CI01000050_05069414_05117314 (FRMD3)


Basic Information

Item Value
gene id CI01000050_05069414_05117314
gene name FRMD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5069414 ~ 5117314 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05069414_05117314.mRNA
GACACTAAAGGGCAGTTTGTCTTGGATCATGTGTGTAACTACTACAGCCTGCTGGAGAAAGATTACTTTGGCATCAGATATGTGGATCCAGAGAAACAAAGGCATTGGTTGGACCCGAGCAAACCAGTAGTGAAACAGATGAAATGTCAGCAGCCATACACTATGTGCTTCAGGGTGAAGTTCTACCCTCAGGAGCCAATCAAGATCAAGGAAGAGCTGACAAGGTACCTTCTGTACCTGCAGTTGAAAAGAGACGTGTACCACGGTAGGCTTTTATGCCCGTTCGCCGATGCTGCATATCTTGGAGCCTGTATAGTGCAGGCTGAACTTGGGGACTATGATCCTGAGGAACATCCTGCTGACTACATCAGCGACTTCAAGCTCTTCCCCAAACAGTCCCTCAAACTAGAACGCAAGATCATGGAGATCCACCAAACTGAGCTGAGGGGACAATGTCCTGCACTCGCAGAGTTAAACCTTCTTCAGAGGGCCCACACACTAGACACATATGGAGTGGACCCACACCCATGCAAGGATTTCACAGGATCCACAGCTTTCCTGGGATTCACTGCAAGAGGGTTTGTGGTTTTCCAGGGAAATAAGCGGATACATCTTTTAAAATGGGCAGATGTCAGCAAATTCAAGTTTGAAGGGAAAACATTCTATGTGATTGGCGTGCAAAGAGAGAAGAAACTGGTTCTGACATTCCACACCTCCACACCAGCAGCCTGTAAACACCTTTGGAAATGTGCTGTGGAAAATCAGGCATTTTACAAATGTGCAAAGTCAAGTCAGATAAAGACTGTGTCCAGCAGCAGTATATTTTTCAAGGGAAGCCGATTTCGCTACAGTGGTCGGGTGGCTAAAGAAGTGATTGAAGCCAGTTCAAAGATTCAGAGAGAACCTCCTGTTGTACACAGGTCTCAGTTTGGCCAAAGCAGAAGCTTTACTTCACTCAGTCATAAACAGCTCATAATGAACATGGAGCCCCTCCTACCAGCACTGAGCTCCAGCAGGGAACACAGAGACTCCTCAGCAGACAATGGACTCTCAGCTTTGAAAGACTCGGTTCATCTGTCCCCACTGAAACCGTCGGTCACTCCTGAGGAAGCAGAGATAGAAGAAAGGGAAAACCACAGTCAGGAAAGACGCGAAGACGAAGCAGCCAACAGGACGAGAGCAGATGAGGAAAGGAGAGAGATACATGTAGACTGTGAAGAGGATGGGTGCAGCACTCTCACCATATCTGACATGGCGTACAGCCCGTGCGCCAGCATGGTGCCGACACCAGTGGAGGAGGGTCAGGGCGGCCTGGACCTTCTGTTCCAGAGCCCCGCACGCTTGCTGAAGGAGCTGCACGCTGATCCAGAAATGCAGGTGGAGCTTCAAGCGGAGAGGGAGAGGGAACTCGCCAGAGAGGCGTTTCGTCAGTCGCTGTGTAACCCGTCGAGCGGGCGGCAGCAGATGCAGGCCTGCCTGCGCAGTGCCGCCCGTCTGGTGGTGATGGCTACCGGCCTCCTCATGATTCTACTTCCCCTCCTCCTCGTTCTGCTGGAGTCGGACCTGGACATCTCGTTCTTGCATGACATCCGCCAGACGCCCGAGTTCGAGCAGTTCCACTACGAGTACTACTGCCCCCTGCGACGCTGGTTCCTCTGCAAACTCGAACTCATAACAGAGCAGCTATGGGGCGAC

Function

symbol description
frmd3 Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in actomyosin structure organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoskeleton. Orthologous to human FRMD3 (FERM domain containing 3).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05069414_05117314.mRNA True 1695 mRNA 0.51 13 5069414 5117314

Neighbor

gene id symbol gene type direction distance location
CI01000050_05034897_05045722 GKAP1 coding upstream 23457 5034897 ~ 5045957 (+)
CI01000050_05027317_05033248 CUNH9ORF64, C5H9ORF64 coding upstream 36112 5027317 ~ 5033302 (+)
CI01000050_05014220_05023731 NA coding upstream 45242 5014220 ~ 5024172 (+)
CI01000050_04865991_04906702 AGTPBP1 coding upstream 161999 4865906 ~ 4907415 (+)
CI01000050_04759894_04762802 NA coding upstream 306313 4759823 ~ 4763101 (+)
CI01000050_05160439_05203170 NA coding downstream 42603 5159917 ~ 5203373 (+)
CI01000050_05220463_05237857 OPN7D coding downstream 103149 5220463 ~ 5238347 (+)
CI01000050_05300337_05306942 SYP, SYPB coding downstream 183023 5300337 ~ 5306942 (+)
CI01000050_05327777_05328382 PLP2 coding downstream 210463 5327777 ~ 5328399 (+)
CI01000050_05362253_05376134 PRICKLE3 coding downstream 244939 5362253 ~ 5377514 (+)
G215380 NA non-coding upstream 145578 4923602 ~ 4923836 (+)
G215332 NA non-coding upstream 216003 4810229 ~ 4853411 (+)
G215361 NA non-coding upstream 222205 4846402 ~ 4847209 (+)
G215319 NA non-coding upstream 290156 4770939 ~ 4779258 (+)
G215348 NA non-coding downstream 5391 5122705 ~ 5127959 (+)
G215478 NA non-coding downstream 162058 5279372 ~ 5312891 (+)
G215474 NA non-coding downstream 168325 5285639 ~ 5287362 (+)
G215499 NA non-coding downstream 272635 5389949 ~ 5390319 (+)
G215500 NA non-coding downstream 286611 5403925 ~ 5404270 (+)
CI01000050_04591548_04592778 NA other upstream 476365 4589926 ~ 4593049 (+)
G214717 NA other upstream 961134 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 1112370 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 1260675 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 2203592 2852118 ~ 2865822 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 290271 5407585 ~ 5409417 (+)
G215539 NA other downstream 512296 5629610 ~ 5631203 (+)
G215773 NA other downstream 1543874 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010408 NA coding CM030129.1 CM030129.1 28303292 ~ 28334876 (+)