CI01000050_05220463_05237857 (OPN7D)


Basic Information

Item Value
gene id CI01000050_05220463_05237857
gene name OPN7D
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5220463 ~ 5238347 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05220463_05237857.mRNA
GTATTCTGTCACTTTTGGGAAATGGCATCCTGCTCCTTGTTGCGTATCGTAAGAGATCATCTCTGAAGCCGGCAGAGTTCTTCATAATAAATTTATCTATCAGTGACCTTGGAATGACAGTTACACTCTTTCCCTTGGCGATTCCATCAGCCTTTGCTCACAAGTGGTTGTTTGGAGAGCTGACATGTTTATGTTATGCTGTATGTGGCGTCCTCTTCGGCTTATCCAGCCTGACAAATCTCACTGCTCTGTCGTCCGTCTGCTGCCTCAAAGTCTGCTTCCCGAACTACGGAAACAAATTCTCCTACTCTCACGCCTGTCTGATGATTGTGGGGGTGTGGTGCTATGCCATGGTGTTTGCTATTGGTCCCTTGGCAAATTGGGGTCACTATGGCCCTGAACCCTATGGGACAGCATGCTGCATAGACTGGTATGCACCAGGCCAGGACGCTTTGTCCATGTCCTATATTATCTGCCTGTTCCTCTTCTGCTACGCCCTGCCTCTTACCATCATCTTACTGTCCTACATCCTGATCCTCATCACCGTACGAGGGTCACGGCAGGCAGTACAGCAACATGTGTCACCACAGACCAAGACGACAAATGCACACATCCTCATTGTGAAGCTCTCTGTGGCGGTATGCATTGGTTTTCTGACCGCATGGAGCCCTTATGCTGTTGTGGCAATGTGGGCTGCATTTGGAGAATCTAATAATGTCCCACCTATAGCCTTTGCTTTGGCAGCTATCTTTGCAAAATCCTCCACCATCTACAACCCTGTGGTGTACCTGGTATTTAAGCCCAACTTTCGTAAATCTCTGAGCAGGGACACAGCTCAGATTCGCAGACGAATTTGTTCCAGTCCATGTAAGGGAAGCCCTGTGCCTGGAGAGAAGGATCTTCATCGGCAAACATCTTTACGCTGCAAAAAGGATGCTAGCAACTCCACTCGACTTTCCAATGGGCTGGCAGACAGCCACGGGGCTTGTCTTCATTGCACCGAGGCAGACCCTCGTTGTCAACAGACAACACCTCAAAGGACTGCCTGTGTGCTGATCGGTACATCCTACAGCGAGGTGACTGTGAGTCAGATGCCAGAGAAGATGCAAGCTGACCTTCTGTGAAGGCCCTGTAGGCTCTCCTCATGCCAGCATGAGGATGAATGTGAGGAACAGATGGATGGGCAGCCTCAAAATGAAACTTCTGCCCACTAGAGATAAGCTTGTCAGACAAGCTGTGGTCAGAAAACACTTCTGATACTGATGTCATGTATTAGAACTGCAAAACAATTGACCCTGCATTAAGTCCCGCCTTAAAAAGGTTACTGACCAATCCTACCGTAGCAACTGTTGGCGTCCGCCATTTTATAAGACTAGCTTGTGCTCTTTCACTGAAAATCTGTTCACAGAAATCATTCACTGTAAAAAAAATAAATAAAATAAAATAAAATAAAAAAGAAGCAAAGCATTTTTTAGTTTTCTCAAGTTCCGTAGATAGCTGTGCCAACTAATTTTTGAAAGGTAGACTCAAACTTCCATTTTAAGTAATATCAACCTGTCTCAGAAAGTACATAGTAAATATTAAGAATTTGTTGGAAGTTAAGTATGCGGTTAA

Function

symbol description
opn7d Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; heart; integument; and testis.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K08385 OPN5; G0-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05220463_05237857.mRNA True 1614 mRNA 0.46 5 5220463 5238347

Neighbor

gene id symbol gene type direction distance location
CI01000050_05160439_05203170 NA coding upstream 17090 5159917 ~ 5203373 (+)
CI01000050_05069414_05117314 FRMD3 coding upstream 103149 5069414 ~ 5117314 (+)
CI01000050_05034897_05045722 GKAP1 coding upstream 174506 5034897 ~ 5045957 (+)
CI01000050_05027317_05033248 CUNH9ORF64, C5H9ORF64 coding upstream 187161 5027317 ~ 5033302 (+)
CI01000050_05014220_05023731 NA coding upstream 196291 5014220 ~ 5024172 (+)
CI01000050_05300337_05306942 SYP, SYPB coding downstream 61990 5300337 ~ 5306942 (+)
CI01000050_05327777_05328382 PLP2 coding downstream 89430 5327777 ~ 5328399 (+)
CI01000050_05362253_05376134 PRICKLE3 coding downstream 123906 5362253 ~ 5377514 (+)
CI01000050_05382547_05383818 NA coding downstream 143696 5382043 ~ 5383866 (+)
CI01000050_05388158_05405937 NA coding downstream 149715 5388062 ~ 5406041 (+)
G215348 NA non-coding upstream 92504 5122705 ~ 5127959 (+)
G215358 NA non-coding upstream 130884 5066806 ~ 5089579 (+)
G215380 NA non-coding upstream 296627 4923602 ~ 4923836 (+)
G215332 NA non-coding upstream 367052 4810229 ~ 4853411 (+)
G215478 NA non-coding downstream 41025 5279372 ~ 5312891 (+)
G215474 NA non-coding downstream 47292 5285639 ~ 5287362 (+)
G215499 NA non-coding downstream 151602 5389949 ~ 5390319 (+)
G215500 NA non-coding downstream 165578 5403925 ~ 5404270 (+)
G215503 NA non-coding downstream 180813 5419160 ~ 5421264 (+)
CI01000050_04591548_04592778 NA other upstream 627414 4589926 ~ 4593049 (+)
G214717 NA other upstream 1112183 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 1263419 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 1411724 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 2354641 2852118 ~ 2865822 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 169238 5407585 ~ 5409417 (+)
G215539 NA other downstream 391263 5629610 ~ 5631203 (+)
G215773 NA other downstream 1422841 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036755 opn7d coding NC_007119.7 CM002892.2 49478026 ~ 49499457 (-)