RNA id: TU244325


Basic Information

Item Value
RNA id TU244325
length 1078
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G215358
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5066806 ~ 5089579 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGAGTCAGGGTACAGGCAAGGATCAGGGCAGGCAGCAAACAATCACAGTCCAGGAAACAGGCAAAGATCAGGGTAGGCAGCAAAGGGTCGCAGGGAATAAACAGTCCAATCGGTAACAGATAAACAGTCCACAGAAACACGCTCAGAAATGATCACCTCGGCAAATCAAGACTTCGCGATGTGTGTGTGTGTGAGTGTGTCTTATATAGTGTGAGTGTGATGCGGTGCAGGTGTGTGTGCAATCAGTCCCAGGAGTGAGGGCCCATGGGAAACGTAGTCCGAATGAGAACTGATCAGTATTCCGGTGATGGCTCCCTCCGGTGGTCCGGAGGAGGGGCCGAAGGAGCCATATTCGTGACACTACCACTCAGAACCTCTTAGCAACCACATAGCAACACCCTATCACACCTATAACACAACCATAAATAACACCCTGCATTGTGGCAACACAGTAACTACAACTCAGAACACCTTAGCAAGCACAAACAGCACCCTATAGCATTGTGGCAACACACCAACAATTACTCAGAACACCTTAGTAACCATAAAGCAACCCTCTAGCAACCACAAATAACACCCTAGCATTGTGTTTAACATTTATAATTGCAAAATTATGATTTTTTTCTTCTCTCCCTTTCTTGTACATATTTCTCTTATTTCATATGACAATAAATTATATTATAAACATTTTTAATGATGTAATGTAAAATATGAAAAATGTTAGCATGTAAGTATTGTTAATTTTGTTAAGTTCAGCACTATTTTACATTGAGTGGAAAGTTTTCAAAGTGCAAGTTTTTGAAAACGATACCATTATCGTTAGTATCGTATAATTTGTGAAAACGTTGTCGTCATGCACATGCATATTACGCAATGAGTCTATAGGCACGTAGTGTTTCTTTACAAAGTGTTTTAGTCATTTTCGTGGATCTGTGTGAACAGGGACTGTATGCAAAAAATGCAAAGGAAAAACTTTTCCATTTTTAGCATCGTTGTCCTGTAAAGGTTCGGAGTTCGGACTCAAGTTTGGAGGCCAAGAGGGCCGCATTTAAACCACATAAAATGCAAAGGGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244347 lncRNA upstream 142970 4923602 ~ 4923836 (+) True G215380
TU244295 lncRNA upstream 213395 4810229 ~ 4853411 (+) True G215332
TU244328 lncRNA upstream 219597 4846402 ~ 4847209 (+) True G215361
TU244279 lncRNA upstream 287548 4770939 ~ 4779258 (+) True G215319
TU244272 lncRNA upstream 304885 4761276 ~ 4761921 (+) True CI01000050_04759894_04762802
TU244315 lncRNA downstream 33126 5122705 ~ 5127959 (+) True G215348
TU244450 lncRNA downstream 189793 5279372 ~ 5312891 (+) True G215478
TU244445 lncRNA downstream 196060 5285639 ~ 5287362 (+) True G215474
TU244472 lncRNA downstream 300370 5389949 ~ 5390319 (+) True G215499
TU244473 lncRNA downstream 314346 5403925 ~ 5404270 (+) True G215500
CI01000050_05034897_05045722.mRNA mRNA upstream 20849 5034897 ~ 5045957 (+) True CI01000050_05034897_05045722
CI01000050_05027317_05033248.mRNA mRNA upstream 33504 5027317 ~ 5033302 (+) True CI01000050_05027317_05033248
CI01000050_05014220_05023731.mRNA mRNA upstream 42634 5014220 ~ 5024172 (+) True CI01000050_05014220_05023731
CI01000050_04865991_04906702.mRNA mRNA upstream 159391 4865906 ~ 4907415 (+) True CI01000050_04865991_04906702
CI01000050_04759894_04762802.mRNA mRNA upstream 303705 4759894 ~ 4763101 (+) False CI01000050_04759894_04762802
CI01000050_05160439_05203170.mRNA mRNA downstream 70338 5159917 ~ 5203373 (+) True CI01000050_05160439_05203170
CI01000050_05220463_05237857.mRNA mRNA downstream 130884 5220463 ~ 5238347 (+) True CI01000050_05220463_05237857
CI01000050_05300337_05306942.mRNA mRNA downstream 210758 5300337 ~ 5306942 (+) True CI01000050_05300337_05306942
CI01000050_05327777_05328382.mRNA mRNA downstream 238198 5327777 ~ 5328399 (+) True CI01000050_05327777_05328382
CI01000050_05362253_05376134.mRNA mRNA downstream 272674 5362253 ~ 5377514 (+) True CI01000050_05362253_05376134
TU243790 other upstream 473757 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 958526 4107582 ~ 4108280 (+) True G214717
TU243465 other upstream 1109762 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243394 other upstream 1258067 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU244350 other downstream 318006 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 540031 5629610 ~ 5631012 (+) False G215539
TU244521 other downstream 540031 5629610 ~ 5631203 (+) True G215539
TU244783 other downstream 1571609 6661188 ~ 6665703 (+) True G215773

Expression Profile