RNA id: CI01000050_05160439_05203170.mRNA



Basic Information


Item Value
RNA id CI01000050_05160439_05203170.mRNA
length 1220
RNA type mRNA
GC content 0.50
exon number 4
gene id CI01000050_05160439_05203170
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5159917 ~ 5203373 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAAGCAGAATGGCAGAAAAAAGGGGGTGGACCTGGTGGAGAGACATGTATGATATATCTAGGATGAAAGATACAGAGGGGGAGGGAAAACAGAGAGCGAGAGAGTAAGATTGAAAGTGAGAGAGACCATGCTGTTAGGTATAGACAACAAGCCTCAGTGTCTTTCTTGCCATGCTTGGACTGTTAGCGTTCTGGACTGAGCCACTCTTCATACCATATGGGAAAAACATTTGAGAGAGTGCGTGTGTTTGTGTGTGCAGCCTGAATGAGTGAGTCAAGCCCAATGCACATCACATCTCTGCAACTGTCCGAACTGTCCTTACTCCTTGTGTGGATGTGTGTGTGTGAGTGTGGACCCACATTTTTCCATCAGTGTGTCTGTATGCGTGTCAGACGCTGGCTTGCTCTGCGCAGAGTCTCTCCGAGCTCCAGTCTAGCGCTCTTTCTGCCTCAGTCTGAGGACCGACACATCCTCTGCCCTCTCGCTGCTGCTTTGCCCTGGATCACCTTTGGCCTCCATGAGTGCAACTGAGGAAATCCAGCCTCTCCCTGGAAGGTATGACATGTCACGAGGATGCACAGCTTCCTCACCTGTTTTAGGTCAAGTTGCAGTGGATGCAGTAGAGCTTGTCCCTCCAGCCAAGATGAAGAAGGGTTTCTATAGCCCTTACCTCATCGTACCGAAAAAACCCATTTCGGATGATGATCCGTATGAGTTCTGTATTGAATGTCTGGGGGAAAGACACGCTTTATCAGCCCTCAGGGATGCAGAGTGTGAGCACTGCGAGACATTTCCCAACAAAGTGCTCCGCTCCAGGCTCGCATATATCAGAGTACAAGAGCGTGCCTGCGCATCCTCAACATTACATTCTTGGGTCTTGCGTATCGATCTAGATCATGTGTTCGTCAAGCCCACTTCTGAAGGGCGCCCCGGTGCTTCTTCAGACCGGCCTGAGGATGAAAGCTCTCTTGGGGAAATGGACATCGAGTGTGCTGCCTCTGAGCGCTCATGACGTGACAACAGATCATACGATGAGCTTCTTGAGGTTATCACTTGCGCTGTGCAGTCTTCAGTTAGACTGGCCACAGGAACAAGAGACCCCCAGACGATCTAATTAGATGACAGATTTCTGTCGGGTGGCCAAGGGGAAGCCCCAGAGAGATGGTCCCCTCCCCTTTTTTCCAGATCGCCATGACGAACTGCAAAAGTAATGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU244315 lncRNA upstream 31958 5122705 ~ 5127959 (+) True G215348
TU244325 lncRNA upstream 70338 5066806 ~ 5089579 (+) True G215358
TU244347 lncRNA upstream 236081 4923602 ~ 4923836 (+) True G215380
TU244295 lncRNA upstream 306506 4810229 ~ 4853411 (+) True G215332
TU244328 lncRNA upstream 312708 4846402 ~ 4847209 (+) True G215361
TU244450 lncRNA downstream 75999 5279372 ~ 5312891 (+) True G215478
TU244445 lncRNA downstream 82266 5285639 ~ 5287362 (+) True G215474
TU244472 lncRNA downstream 186576 5389949 ~ 5390319 (+) True G215499
TU244473 lncRNA downstream 200552 5403925 ~ 5404270 (+) True G215500
TU244476 lncRNA downstream 215787 5419160 ~ 5421264 (+) True G215503
CI01000050_05069414_05117314.mRNA mRNA upstream 42603 5069414 ~ 5117314 (+) True CI01000050_05069414_05117314
CI01000050_05034897_05045722.mRNA mRNA upstream 113960 5034897 ~ 5045957 (+) True CI01000050_05034897_05045722
CI01000050_05027317_05033248.mRNA mRNA upstream 126615 5027317 ~ 5033302 (+) True CI01000050_05027317_05033248
CI01000050_05014220_05023731.mRNA mRNA upstream 135745 5014220 ~ 5024172 (+) True CI01000050_05014220_05023731
CI01000050_04865991_04906702.mRNA mRNA upstream 252502 4865906 ~ 4907415 (+) True CI01000050_04865991_04906702
CI01000050_05220463_05237857.mRNA mRNA downstream 17090 5220463 ~ 5238347 (+) True CI01000050_05220463_05237857
CI01000050_05300337_05306942.mRNA mRNA downstream 96964 5300337 ~ 5306942 (+) True CI01000050_05300337_05306942
CI01000050_05327777_05328382.mRNA mRNA downstream 124404 5327777 ~ 5328399 (+) True CI01000050_05327777_05328382
CI01000050_05362253_05376134.mRNA mRNA downstream 158880 5362253 ~ 5377514 (+) True CI01000050_05362253_05376134
CI01000050_05382547_05383818.mRNA mRNA downstream 178670 5382043 ~ 5383866 (+) True CI01000050_05382547_05383818
TU243790 other upstream 566868 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 1051637 4107582 ~ 4108280 (+) True G214717
TU243465 other upstream 1202873 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243394 other upstream 1351178 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU244350 other downstream 204212 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 426237 5629610 ~ 5631012 (+) False G215539
TU244521 other downstream 426237 5629610 ~ 5631203 (+) True G215539
TU244783 other downstream 1457815 6661188 ~ 6665703 (+) True G215773

Expression Profile