RNA id: TU243790



Basic Information


Item Value
RNA id TU243790
length 639
RNA type TUCP
GC content 0.36
exon number 4
gene id CI01000050_04591548_04592778
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4589926 ~ 4593049 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATTTCATCAGACCATCATCTGCGCTAAACTTGCAAAAATGACATCTTTGGCTCTGGTTTTGGTATTTTGTGCCTTTGTCTCTTTAAGCGATTCTTACTGTTTCCATGAACGTGTAAAACCAGGGGCAAGATATTGTACGGATGCAGATGATAAATCCCAGCATCCAGTAGGAAGTACTTGGACAAACAACAGATGCATCCGATGCACATGCTCCTCCAACATGATGTCATGCTGTGACATGATGGGTAAACCCATAATCAAGACTGGAGGCTGCATTGTGAAGTATGATTACAGAACATGCACATTTAAAGTGTTTCATCCAGAAGATCCCACCATTATGTGTTCCTATGGTGCTGTTGGAAAATAATTTCCAATGATTGAAAATACAAATCAGTGATGTGTACGTATTTTGACTAAAATGAATATAAACTGCTTTTGGATCCAAACTGGATTATCAATTGTAATTAATAAACAACTAAAAAAGGTTAAATCTTGTTAACCAAAAGGTCTAGCATTCAAGGCTTTCCTTCTTACTTTTATCAAAGAAAAAGCTCTTATTTTTAAATTAAAGCTAATAAGAGAACATCTTATATCTGTAAAATTAGTTTATACCTAGCACTTGTCCATGTATAGAGGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU243791 lncRNA upstream 2056 4588689 ~ 4589499 (+) True G214875
TU243689 lncRNA upstream 17999 4571831 ~ 4573556 (+) True G214784
TU243784 lncRNA upstream 31359 4559580 ~ 4560196 (+) True G214868
TU243778 lncRNA upstream 43655 4547570 ~ 4547900 (+) True G214862
TU243700 lncRNA upstream 48518 4506759 ~ 4543037 (+) True G214795
TU243793 lncRNA downstream 5923 4598972 ~ 4601810 (+) False G214877
TU243794 lncRNA downstream 5923 4598972 ~ 4601810 (+) True G214877
TU243858 lncRNA downstream 112872 4705921 ~ 4707929 (+) False G214930
TU243859 lncRNA downstream 112872 4705921 ~ 4707929 (+) True G214930
TU244269 lncRNA downstream 155592 4748641 ~ 4748911 (+) True G215309
CI01000050_04430129_04436139.mRNA mRNA upstream 154098 4429979 ~ 4437457 (+) True CI01000050_04430129_04436139
CI01000050_04406761_04429903.mRNA mRNA upstream 161652 4406761 ~ 4429903 (+) True CI01000050_04406761_04429903
CI01000050_04303341_04330327.mRNA mRNA upstream 260314 4303341 ~ 4331241 (+) True CI01000050_04303341_04330327
CI01000050_04281992_04287535.mRNA mRNA upstream 303753 4281992 ~ 4287802 (+) True CI01000050_04281992_04287535
CI01000050_04275924_04277061.mRNA mRNA upstream 313908 4275924 ~ 4277647 (+) True CI01000050_04275924_04277061
CI01000050_04617015_04691858.mRNA mRNA downstream 23688 4616737 ~ 4691974 (+) True CI01000050_04617015_04691858
CI01000050_04700488_04701991.mRNA mRNA downstream 107295 4700344 ~ 4702040 (+) True CI01000050_04700488_04701991
CI01000050_04759894_04762802.mRNA mRNA downstream 166845 4759894 ~ 4763101 (+) False CI01000050_04759894_04762802
CI01000050_04865991_04906702.mRNA mRNA downstream 272857 4865906 ~ 4907415 (+) True CI01000050_04865991_04906702
CI01000050_05014220_05023731.mRNA mRNA downstream 421171 5014220 ~ 5024172 (+) True CI01000050_05014220_05023731
TU243616 other upstream 483275 4107582 ~ 4108280 (+) True G214717
TU243465 other upstream 634511 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243391 other upstream 782816 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other upstream 782816 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other upstream 782816 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU244350 other downstream 814536 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 1036561 5629610 ~ 5631012 (+) False G215539
TU244521 other downstream 1036561 5629610 ~ 5631203 (+) True G215539
TU244783 other downstream 2068139 6661188 ~ 6665703 (+) True G215773

Expression Profile