G214930


Basic Information

Item Value
gene id G214930
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4705921 ~ 4707929 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU243858
ATCTTTATTCATGTTGATTTTATGCACAACATAGTAATGTAATCATGAAATTTAAAAAAAAAATCACAATATTTGAATCAAAGGAAGTACATAAGCATTTTAATCCCAAATAAAGTAGTATATAAAATATAACCCTTCTATACCAAATAAAAACAAAACATAAGTGAAAGACAAAACACAAAATGGTCCCATGGAAACAATCAAAATGATGGTGGCGTTGTATGGGGCAGGCTCTATGTAACATAGCATACTTCATGTTCTCGGTTTTTCTCTGTCATTTGGCAGTACTACTGTAAACCGTAGACACATTGTAACAAGGCCTCTGAATTTCCTAAAATAAAGGAATCAAAGAATGGAAGCCAGAATGATCATCCATATATTTGAAGTACACAACTAAAGTGTTAATCTCAGTAACTGATTATAAATATTACACTCATATAGTAACTACCGATACAGTTGAGTCACCAACTGCAGTGATTCACTATCACTGTGTTTAAATCATTTTTATGAAATGACTTTTTTTTTTTTCTTTTTTTTTTGTGGAAACTAATAGGTAGTATTTCAAAGGCAATATTCAAACATTTCGTTCTCTTCATCATGCGATGTAAACATTTCATTTCATTTAGAAATGGCTGACTGGTCTTTTAAAAGGACAGTAGATTTCCTTGTGCGAAATTAAACCGAACATGACCATTTCTATGACCCAGTTTGACAAAAGCACATAGAAATTTAATTAAAATGTAGTCACATACTGTAAATCAGATCATACATTCACTTCATATTTGACCCTTCATGCACATGCATCTACAGGGGCTGTAGTCATTTTGCCTTCCTTTCTGGCAGGGATTCATTCAGGTCTTTGCAACAAGACTGAAAAAACCTCTAAAAGTAAGTATCATGATCTTTTTTTCTTTTTTTTTTTTTCCCAGCATTTATTAATCTAGGTCATTTATAAATATACTATTATCAACTGTTAATTCATGTTTGTTCAGAATACATTAATTAAAGTTAATTTATATATCTTTATTTGTTAAAAATGTATTAGTATACTTAGAAATTAACATGAACCAAGATTAGTAAATGTTAATAAAAGTACTTAACCTTATTGTAAAGTATTAGCCTACTATTTTAAAAACCATGAAAGTTATATATTAATATCTCAAAGCAATGGATTGAGAAGACAGGATGTCTAGACCAAACTCTAGTGGACATCAGAATTGGTTTAAAATTCAGACAAAAGCAATAATGTATCAATGCCCCTAAAGGCCACTGTGTGCTCTGAGTAAAGAAGGTTAACTATGGAAATCCCTGTGGATATGAAAATCCAGATGATTAGAGGTCATCCCGGGAAAAACATGCTCATCAGTAACAAGTGCATCCCCTTAAATAGCAGCAAACCGGATAAACTAAATAGTGTGCAAACTACCACTAAGCACTGATTCACAGTTTTTTTTTTTTTCCCCTCAGTGCCACATATCACTAGAATCCTGCTTTTTTTTTTTCTCGTATGGAAAGCAGCTAAAGGAGAGTTTTGAGCCTCTTTTGTTACTAAAAGCAAACTGGAACACCATCTTTGCTACACAAATGCATATGTGTATTTGATGATAAGTATCTAGAAGCCTTTCTGGGCTAAACAAATATTATGAATAGAGCAAAAAAACAATAAACAGCCCTTAGACAAACTTGTTATAGGTTTAGGTCTAGTATCGCCACCCCATACACGCCACCACTAAAAGACAAAAAAAAAAAAAAAAATCACATTCCAGTCAACAGCAATGATATGAAGCCAGAATCATGCTCTGAGATGAGATATGATATAGGAGGTACACTTCAGGTTCTTTAGGAACGTTATATGAAAGCTGGCATGTATAAAACTCATTGTCTTCATGTTTTGATAGTCTGTACTTGGGAATATGTGTGTGTGTTTGGGGCATCGATCAGGAAGCGTTTACTCAACAGTCACAGACTTGGCCAGGTTTCTTGGACAAT
>TU243859
ATCTTTATTCATGTTGATTTTATGCACAACATAGTAATGTAATCATGAAATTTAAAAAAAAAATCACAATATTTGAATCAAAGGAAGTACATAAGCATTTTAATCCCAAATAAAGTAGTATATAAAATATAACCCTTCTATACCAAATAAAAACAAAACATAAGTGAAAGACAAAACACAAAATGGTCCCATGGAAACAATCAAAATGATGGTGGCGTTGTATGGGGCAGGCTCTATGTAACATAGCATACTTCATGTTCTCGGTTTTTCTCTGTCATTTGGCAGTACTACTGTAAACCGTAGACACATTGTAACAAGGCCTCTGAATTTCCTAAAATAAAGGAATCAAAGAATGGAAGCCAGAATGATCATCCATATATTTGAAGTACACAACTAAAGTGTTAATCTCAGTAACTGATTATAAATATTACACTCATATAGTAACTACCGATACAGTTGAGTCACCAACTGCAGTGATTCACTATCACTGTGTTTAAATCATTTTTATGAAATGACTTTTTTTTTTTTCTTTTTTTTTTGTGGAAACTAATAGGTAGTATTTCAAAGGCAATATTCAAACATTTCGTTCTCTTCATCATGCGATGTAAACATTTCATTTCATTTAGAAATGGCTGACTGGTCTTTTAAAAGGACAGTAGATTTCCTTGTGCGAAATTAAACCGAACATGACCATTTCTATGACCCAGTTTGACAAAAGCACATAGAAATTTAATTAAAATGTAGTCACATACTGTAAATCAGATCATACATTCACTTCATATTTGACCCTTCATGCACATGCATCTACAGGGGCTGTAGTCATTTTGCCTTCCTTTCTGGCAGGGATTCATTCAGGTCTTTGCAACAAGACTGAAAAAACCTCTAAAAGTAAGTATCATGATCTTTTTTTCTTTTTTTTTTTTTCCCAGCATTTATTAATCTAGGTCATTTATAAATATACTATTATCAACTGTTAATTCATGTTTGTTCAGAATACATTAATTAAAGTTAATTTATATATCTTTATTTGTTAAAAATGTATTAGTATACTTAGAAATTAACATGAACCAAGATTAGTAAATGTTAATAAAAGTACTTAACCTTATTGTAAAGTATTAGCCTACTATTTTAAAAACCATGAAAGTTATATATTAATATCTCAAAGCAATGGATTGAGAAGACAGGATGTCTAGACCAAACTCTAGTGGACATCAGAATTGGTTTAAAATTCAGACAAAAGCAATAATGTATCAATGCCCCTAAAGGCCACTGTGTGCTCTGAGTAAAGAAGGTTAACTATGGAAATCCCTGTGGATATGAAAATCCAGATGATTAGAGGTCATCCCGGGAAAAACATGCTCATCAGTAACAAGTGCATCCCCTTAAATAGCAGCAAACCGGATAAACTAAATAGTGTGCAAACTACCACTAAGCACTGATTCACAGTTTTTTTTTTTTTCCCCTCAGTGCCACATATCACTAGAATCCTGCTTTTTTTTTTTCTCGTATGGAAAGCAGCTAAAGGAGAGTTTTGAGCCTCTTTTGTTACTAAAAGCAAACTGGAACACCATCTTTGCTACACAAATGCATATGTGTATTTGATGATAAGTATCTAGAAGCCTTTCTGGGCTAAACAAATATTATGAATAGAGCAAAAAAACAATAAACAGCCCTTAGACAAACTTGTTATAGGTTTAGGTCTAGTATCGCCACCCCATACACGCCACCACTAAAAGACAAAAAAAAAAAAAAAATCACATTCCAGTCAACAGCAATGATATGAAGCCAGAATCATGCTCTGAGATGAGATATGATATAGGAGGTACACTTCAGGTTCTTTAGGAACGTTATATGAAAGCTGGCATGTATAAAACTCATTGTCTTCATGTTTTGATAGTCTGTACTTGGGAATATGTGTGTGTGTTTGGGGCATCGATCAGGAAGCGTTTACTCAACAGTCACAGACTTGGCCAGGTTTCTTGGACAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU243858 False 1989 lncRNA 0.33 2 4705921 4707929
TU243859 True 1988 lncRNA 0.33 2 4705921 4707929

Neighbor

gene id symbol gene type direction distance location
CI01000050_04700488_04701991 NA coding upstream 3881 4700344 ~ 4702040 (+)
CI01000050_04617015_04691858 ANTXR1A, ANTXRL, ANTXR1 coding upstream 13947 4616737 ~ 4691974 (+)
CI01000050_04591548_04592778 NA coding upstream 113043 4589926 ~ 4593049 (+)
CI01000050_04430129_04436139 NA coding upstream 268464 4429979 ~ 4437457 (+)
CI01000050_04406761_04429903 DISP3 coding upstream 276018 4406761 ~ 4429903 (+)
CI01000050_04759894_04762802 NA coding downstream 51965 4759823 ~ 4763101 (+)
CI01000050_04865991_04906702 AGTPBP1 coding downstream 157977 4865906 ~ 4907415 (+)
CI01000050_05014220_05023731 NA coding downstream 306291 5014220 ~ 5024172 (+)
CI01000050_05027317_05033248 CUNH9ORF64, C5H9ORF64 coding downstream 319388 5027317 ~ 5033302 (+)
CI01000050_05034897_05045722 GKAP1 coding downstream 326968 5034897 ~ 5045957 (+)
G214877 NA non-coding upstream 104111 4598972 ~ 4601810 (+)
G214875 NA non-coding upstream 116422 4588689 ~ 4589499 (+)
G214784 NA non-coding upstream 132365 4571831 ~ 4573556 (+)
G214868 NA non-coding upstream 145725 4559580 ~ 4560196 (+)
G214862 NA non-coding upstream 158021 4547570 ~ 4547900 (+)
G215309 NA non-coding downstream 40712 4748641 ~ 4748911 (+)
G215319 NA non-coding downstream 63010 4770939 ~ 4779258 (+)
G215332 NA non-coding downstream 102300 4810229 ~ 4853411 (+)
G215361 NA non-coding downstream 138473 4846402 ~ 4847209 (+)
G214717 NA other upstream 597641 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 748877 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 897182 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 1840099 2852118 ~ 2865822 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 699656 5407585 ~ 5409417 (+)
G215539 NA other downstream 921681 5629610 ~ 5631203 (+)
G215773 NA other downstream 1953259 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location