CI01000050_04617015_04691858 (ANTXR1A, ANTXRL, ANTXR1)


Basic Information

Item Value
gene id CI01000050_04617015_04691858
gene name ANTXR1A, ANTXRL, ANTXR1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4616737 ~ 4691974 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_04617015_04691858.mRNA
ATATTTAAGGACCATGATTGTTGATCTTTGGCTTAATTCAAAGTCAATGGAATATTAACAGCTGGCATCACACTCATTCAGACAGCTGCTCTGGGAGGATGCTGGATACTTGAACGATTTCCCTCTGGGGAGGATAAAAATGTGTCAATGTAGTTTTTGAACTGCTGCTTTTAGAAAAAAAACTCTTATTCACACAGCTGTAAATCTCAAACTTTGGCTATTCTTCTCAGCTTGTGAATTTTTATTGCCCTCTTGATGTTCGACTGTAAGTGTCCAATATGTCTGTTTCACCCTGCAGATCAGGAAGTGTGCAGCATCACTGGAATGAAATATATAACTTTGTGGAACATCTGGCCCATAAGTTCATAAGCCCACAGTTGCGGATGTCCTTCATTGTATTCTCCGATCAGGGCAAGATTTTGATGCAGCTTACAGAAGACAGGGACCAAATTCGTAAAGGTTTGGAGGAACTGAAGAATGTCCGGCCAGGTGGAGACACTTTTATGCATGAAGGCATTCTGAGGGCAAGCGAACAGATTTACTATGGTAACTCTGAGGGATACCGCACAGCCAGTGTCATCATCGCCCTCACAGACGGGGAACTGCACGAAGATCTCTTCTATTACGCTGAGAGAGAGGCCAATCGCTCCCGCAGCCTGGGTGCCTCTGTGTACTGCGTAGGGCTGGCCAAGATTGCTGACAGCAAAGATCATGTTTTCCCAGTAAATGACGGCTTTGAAGCTTTACAAGGTGTCATTGATTCGATCTTGAAGAAATCATGCATAGAGATTCTTGCTGCAGAACCTTCCAGTATCTGTGCTGGAGAGGCATTCCAAGTTGTTGTTAGAGGAAATGGATTCCTTCATGCTAGAAATGTGGACAAGGTTCTTTGCAGCTTCAGAATAAATGACACCCTTACCAGAATGGTGAAGCCATTGGTAGTGGAGGACACATATCTGCTGTGTCCAGCTCCTGTTCTTCGAGAGGAGGGAACGGCAGCTTCCCTTTACGTTAGTATGAACGAAGGCCTGAGTTTTATCTCTAGTTCTGTTACTATCACCACTTCTGATGGTACAATCCTGGCCATAGCACTACTGATAGTGATGCTACTGCTGATTCTGGCTCTCCTGTGGTGGTTCTGGCCTCTGTGCTGCACTGTGGATGAAGAAGAGGATGGAACTCCAAAAAAGAAGTGGCCCACAGTCGATGCGTCCTACTATGGAGGAAGAGGAGTTGGCGGCATTAAAAGAATGGAGGTCCGCTGGGGTGAGAAAGGTTCGACCGAGGAGGGTGCTAAACTGGAAAAGGCGAAGAACGCAAGAGTAAAGATGCCTGAACAAGAGTTTGAGGCTCCTCCTGCTCGCATCCTAAATAATGGCATGCGGAAACCACCAGGCCCTCGTAAATGGTACTCGCCTATAAAGGGAAAACTGGATGCATTGTGGGTACTTCTGAAGAAAGGGTATGATCGAGTGTCCATCATGCGACCACAACCCGGAGACAAGAATAACACCAGCAGCCTGACCAACAGCGGTGCTTCAGTGGCAGAGCAGCTCAACCAGTTCTTCAGCCACTTCAAGGTAGAAAGAACTGGGACTACCATCTACCCAGTTCCCGCCACCGACAGCCAGGCACTCATTATCCAGCCTGCTGGGGCAATACGCACTCTCCGTAAAATCGGCATACTGAAAGCAGCTGGTCCAGATGGCATCCCAGCGTGCATCCTCAGAGACAGTGTTGCAGGGTTGGTGCCAGTGCCAAAGCAGGCTGCCAAAACATTCCTCAACGATTATAGGCCTATTGCACTGACACCCATAATCATGAAATGCCTGGAGAGGCTGGTTCTGCATCACATCAAGGCTGCTCTGCCACCCACCCTGGACCCCCAGCAGTATGCATACAGGGCCAACAGCACAGGGCTGTGTGCTGAACCTGTTCTCTACTCTCTGTATACTCATAACTGTATACCATCTTATAACACTAACACCATTATCAAATTTGCGGATGACATGACTGTGGTGGGGTTGATCTCCAGAGGCGATGAGTCTGCCTTTAGAGAGGAGGGTCGCTGTATGAACTTCACCCGCATCAAGTCTAATCCTCCTCCACGGTATCCATCCTACAACCACCATTCTTCACCCATCTACACCCCCACACAGACCCTCAATCCACCCCCTCCACAGGGCCAGCTGCCCCCTCCTCCATGCAGTCCACCGGCCTCACTATCCTCCAGTTTTCCTCCGTGTTGTGTTTATATGACTCCAAAACTCTGTTATGATGATGGTTTTATGGGTAATTAACATCAGAGAAATCATATATGCTTTTAAAAGGAATCATGTAAATGAATCTTTCTCCAAATGACTTGGATCATGACTGCATTATTTTTTACTTTTTTAACACGTTCTTTTGTTTTGAA

Function

symbol description
antxr1a Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1).
antxr1 Enables actin filament binding activity; collagen binding activity; and transmembrane signaling receptor activity. Involved in actin cytoskeleton reorganization and substrate adhesion-dependent cell spreading. Located in external side of plasma membrane; filopodium membrane; and lamellipodium membrane. Implicated in GAPO syndrome and colorectal carcinoma. Biomarker of breast cancer; colorectal cancer; gallbladder carcinoma; and triple-receptor negative breast cancer.
antxrl Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_04617015_04691858.mRNA True 2416 mRNA 0.47 20 4616737 4691974

Neighbor

gene id symbol gene type direction distance location
CI01000050_04591548_04592778 NA coding upstream 23859 4589926 ~ 4593049 (+)
CI01000050_04430129_04436139 NA coding upstream 179280 4429979 ~ 4437457 (+)
CI01000050_04406761_04429903 DISP3 coding upstream 186834 4406761 ~ 4429903 (+)
CI01000050_04303341_04330327 DNM1L coding upstream 285496 4303341 ~ 4331241 (+)
CI01000050_04281992_04287535 NA coding upstream 328935 4281992 ~ 4287802 (+)
CI01000050_04700488_04701991 NA coding downstream 8370 4700344 ~ 4702040 (+)
CI01000050_04759894_04762802 NA coding downstream 67920 4759823 ~ 4763101 (+)
CI01000050_04865991_04906702 AGTPBP1 coding downstream 173932 4865906 ~ 4907415 (+)
CI01000050_05014220_05023731 NA coding downstream 322246 5014220 ~ 5024172 (+)
CI01000050_05027317_05033248 CUNH9ORF64, C5H9ORF64 coding downstream 335343 5027317 ~ 5033302 (+)
G214877 NA non-coding upstream 14927 4598972 ~ 4601810 (+)
G214875 NA non-coding upstream 27238 4588689 ~ 4589499 (+)
G214784 NA non-coding upstream 43181 4571831 ~ 4573556 (+)
G214868 NA non-coding upstream 56541 4559580 ~ 4560196 (+)
G214862 NA non-coding upstream 68837 4547570 ~ 4547900 (+)
G214930 NA non-coding downstream 13947 4705921 ~ 4707929 (+)
G215309 NA non-coding downstream 56667 4748641 ~ 4748911 (+)
G215319 NA non-coding downstream 78965 4770939 ~ 4779258 (+)
G215332 NA non-coding downstream 118255 4810229 ~ 4853411 (+)
G214717 NA other upstream 508457 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 659693 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 807998 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 1750915 2852118 ~ 2865822 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 715611 5407585 ~ 5409417 (+)
G215539 NA other downstream 937636 5629610 ~ 5631203 (+)
G215773 NA other downstream 1969214 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location