Gene
RNA
| Item | Value |
|---|---|
| gene id | G214877 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 4598972 ~ 4601810 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU243793 | False | 877 | lncRNA | 0.33 | 4 | 4598972 | 4601810 |
| TU243794 | True | 1170 | lncRNA | 0.32 | 3 | 4598972 | 4601810 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_04591548_04592778 | NA | coding | upstream | 6094 | 4589926 ~ 4593049 (+) |
| CI01000050_04430129_04436139 | NA | coding | upstream | 161515 | 4429979 ~ 4437457 (+) |
| CI01000050_04406761_04429903 | DISP3 | coding | upstream | 169069 | 4406761 ~ 4429903 (+) |
| CI01000050_04303341_04330327 | DNM1L | coding | upstream | 267731 | 4303341 ~ 4331241 (+) |
| CI01000050_04281992_04287535 | NA | coding | upstream | 311170 | 4281992 ~ 4287802 (+) |
| CI01000050_04617015_04691858 | ANTXR1A, ANTXRL, ANTXR1 | coding | downstream | 14927 | 4616737 ~ 4691974 (+) |
| CI01000050_04700488_04701991 | NA | coding | downstream | 98534 | 4700344 ~ 4702040 (+) |
| CI01000050_04759894_04762802 | NA | coding | downstream | 158084 | 4759823 ~ 4763101 (+) |
| CI01000050_04865991_04906702 | AGTPBP1 | coding | downstream | 264096 | 4865906 ~ 4907415 (+) |
| CI01000050_05014220_05023731 | NA | coding | downstream | 412410 | 5014220 ~ 5024172 (+) |
| G214875 | NA | non-coding | upstream | 9473 | 4588689 ~ 4589499 (+) |
| G214784 | NA | non-coding | upstream | 25416 | 4571831 ~ 4573556 (+) |
| G214868 | NA | non-coding | upstream | 38776 | 4559580 ~ 4560196 (+) |
| G214862 | NA | non-coding | upstream | 51072 | 4547570 ~ 4547900 (+) |
| G214795 | NA | non-coding | upstream | 55935 | 4506759 ~ 4543037 (+) |
| G214930 | NA | non-coding | downstream | 104111 | 4705921 ~ 4707929 (+) |
| G215309 | NA | non-coding | downstream | 146831 | 4748641 ~ 4748911 (+) |
| G215319 | NA | non-coding | downstream | 169129 | 4770939 ~ 4779258 (+) |
| G215332 | NA | non-coding | downstream | 208419 | 4810229 ~ 4853411 (+) |
| G214717 | NA | other | upstream | 490692 | 4107582 ~ 4108280 (+) |
| CI01000050_03938328_03956122 | RHOBTB2 | other | upstream | 641928 | 3931890 ~ 3957044 (+) |
| CI01000050_03807697_03808793 | CLCN5B, CLCN5 | other | upstream | 790233 | 3805143 ~ 3808870 (+) |
| CI01000050_02852118_02864754 | RNF122 | other | upstream | 1733150 | 2852118 ~ 2865822 (+) |
| CI01000050_05407682_05409108 | FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A | other | downstream | 805775 | 5407585 ~ 5409417 (+) |
| G215539 | NA | other | downstream | 1027800 | 5629610 ~ 5631203 (+) |
| G215773 | NA | other | downstream | 2059378 | 6661188 ~ 6665703 (+) |
