Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU243794 |
| length | 1170 |
| lncRNA type | inter_gene |
| GC content | 0.32 |
| exon number | 3 |
| gene id | G214877 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 4598972 ~ 4601810 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU243791 | lncRNA | upstream | 9473 | 4588689 ~ 4589499 (+) | True | G214875 |
| TU243689 | lncRNA | upstream | 25416 | 4571831 ~ 4573556 (+) | True | G214784 |
| TU243784 | lncRNA | upstream | 38776 | 4559580 ~ 4560196 (+) | True | G214868 |
| TU243778 | lncRNA | upstream | 51072 | 4547570 ~ 4547900 (+) | True | G214862 |
| TU243692 | lncRNA | upstream | 90105 | 4508495 ~ 4508867 (+) | True | G214787 |
| TU243858 | lncRNA | downstream | 104111 | 4705921 ~ 4707929 (+) | False | G214930 |
| TU243859 | lncRNA | downstream | 104111 | 4705921 ~ 4707929 (+) | True | G214930 |
| TU244269 | lncRNA | downstream | 146831 | 4748641 ~ 4748911 (+) | True | G215309 |
| TU244270 | lncRNA | downstream | 158013 | 4759823 ~ 4760036 (+) | False | CI01000050_04759894_04762802 |
| TU244272 | lncRNA | downstream | 159466 | 4761276 ~ 4761921 (+) | True | CI01000050_04759894_04762802 |
| CI01000050_04591548_04592778.mRNA | mRNA | upstream | 6094 | 4589926 ~ 4592878 (+) | False | CI01000050_04591548_04592778 |
| CI01000050_04430129_04436139.mRNA | mRNA | upstream | 161515 | 4429979 ~ 4437457 (+) | True | CI01000050_04430129_04436139 |
| CI01000050_04406761_04429903.mRNA | mRNA | upstream | 169069 | 4406761 ~ 4429903 (+) | True | CI01000050_04406761_04429903 |
| CI01000050_04303341_04330327.mRNA | mRNA | upstream | 267731 | 4303341 ~ 4331241 (+) | True | CI01000050_04303341_04330327 |
| CI01000050_04281992_04287535.mRNA | mRNA | upstream | 311170 | 4281992 ~ 4287802 (+) | True | CI01000050_04281992_04287535 |
| CI01000050_04617015_04691858.mRNA | mRNA | downstream | 14927 | 4616737 ~ 4691974 (+) | True | CI01000050_04617015_04691858 |
| CI01000050_04700488_04701991.mRNA | mRNA | downstream | 98534 | 4700344 ~ 4702040 (+) | True | CI01000050_04700488_04701991 |
| CI01000050_04759894_04762802.mRNA | mRNA | downstream | 158084 | 4759894 ~ 4763101 (+) | False | CI01000050_04759894_04762802 |
| CI01000050_04865991_04906702.mRNA | mRNA | downstream | 264096 | 4865906 ~ 4907415 (+) | True | CI01000050_04865991_04906702 |
| CI01000050_05014220_05023731.mRNA | mRNA | downstream | 412410 | 5014220 ~ 5024172 (+) | True | CI01000050_05014220_05023731 |
| TU243790 | other | upstream | 5923 | 4591555 ~ 4593049 (+) | True | CI01000050_04591548_04592778 |
| TU243616 | other | upstream | 490692 | 4107582 ~ 4108280 (+) | True | G214717 |
| TU243465 | other | upstream | 641928 | 3950602 ~ 3957044 (+) | True | CI01000050_03938328_03956122 |
| TU243394 | other | upstream | 790233 | 3807614 ~ 3808739 (+) | False | CI01000050_03807697_03808793 |
| TU244350 | other | downstream | 805775 | 5409444 ~ 5409648 (+) | True | G215383 |
| TU244520 | other | downstream | 1027800 | 5629610 ~ 5631012 (+) | False | G215539 |
| TU244521 | other | downstream | 1027800 | 5629610 ~ 5631203 (+) | True | G215539 |
| TU244783 | other | downstream | 2059378 | 6661188 ~ 6665703 (+) | True | G215773 |
