RNA id: TU243692


Basic Information

Item Value
RNA id TU243692
length 306
lncRNA type intronic
GC content 0.48
exon number 2
gene id G214787
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4508495 ~ 4508867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGACAGGATCCTGACACTCATGTGTTTGCGTACGGCTTTGGAGTTGTTCTCTGGGCCGTGCGCTCTGAGGATGAGGGTGTTTGTCTGCTATGTTCTCTTCTGTCCTGTGTGTGTGCAGTTTTGTGTGAGCACATGGCTTCTGTCATGTTTGGCTTTTTGTTTGTTTCTGTGTGCCATGTGCTCTTCTGTCAGGCTTTAGTTTTGGCCCCGCCCACTTGTTACCTGGTCATTGGTTCATTTGCCCCACCTGCTCTCTCTCGTTACCCTTCTCATTTCCTTTCCTATTTATACTCCTTTTATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243701 lncRNA upstream 34104 4451298 ~ 4474391 (+) True G214796
TU243703 lncRNA upstream 155771 4352335 ~ 4352724 (+) True G214798
TU243675 lncRNA upstream 236648 4271588 ~ 4271847 (+) True G214771
TU243674 lncRNA upstream 236985 4271265 ~ 4271510 (+) True G214770
TU243671 lncRNA upstream 241068 4267104 ~ 4267427 (+) True G214767
TU243778 lncRNA downstream 38703 4547570 ~ 4547900 (+) True G214862
TU243784 lncRNA downstream 50713 4559580 ~ 4560196 (+) True G214868
TU243689 lncRNA downstream 62964 4571831 ~ 4573556 (+) True G214784
TU243791 lncRNA downstream 79822 4588689 ~ 4589499 (+) True G214875
TU243793 lncRNA downstream 90105 4598972 ~ 4601810 (+) False G214877
CI01000050_04430129_04436139.mRNA mRNA upstream 71038 4429979 ~ 4437457 (+) True CI01000050_04430129_04436139
CI01000050_04406761_04429903.mRNA mRNA upstream 78592 4406761 ~ 4429903 (+) True CI01000050_04406761_04429903
CI01000050_04303341_04330327.mRNA mRNA upstream 177254 4303341 ~ 4331241 (+) True CI01000050_04303341_04330327
CI01000050_04281992_04287535.mRNA mRNA upstream 220693 4281992 ~ 4287802 (+) True CI01000050_04281992_04287535
CI01000050_04275924_04277061.mRNA mRNA upstream 230848 4275924 ~ 4277647 (+) True CI01000050_04275924_04277061
CI01000050_04591548_04592778.mRNA mRNA downstream 81059 4589926 ~ 4592878 (+) False CI01000050_04591548_04592778
CI01000050_04617015_04691858.mRNA mRNA downstream 107870 4616737 ~ 4691974 (+) True CI01000050_04617015_04691858
CI01000050_04700488_04701991.mRNA mRNA downstream 191477 4700344 ~ 4702040 (+) True CI01000050_04700488_04701991
CI01000050_04759894_04762802.mRNA mRNA downstream 251027 4759894 ~ 4763101 (+) False CI01000050_04759894_04762802
CI01000050_04865991_04906702.mRNA mRNA downstream 357039 4865906 ~ 4907415 (+) True CI01000050_04865991_04906702
TU243616 other upstream 400215 4107582 ~ 4108280 (+) True G214717
TU243465 other upstream 551451 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243391 other upstream 699756 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243790 other downstream 82688 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU244350 other downstream 898718 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 1120743 5629610 ~ 5631012 (+) False G215539
TU244521 other downstream 1120743 5629610 ~ 5631203 (+) True G215539
TU244783 other downstream 2152321 6661188 ~ 6665703 (+) True G215773

Expression Profile