CI01000050_06518156_06558229 (PLCH2)


Basic Information

Item Value
gene id CI01000050_06518156_06558229
gene name PLCH2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6517454 ~ 6558818 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_06518156_06558229.mRNA
ATATTAATACCGCATTAATACTAAGAGATGGAAACAGCGCAGAGCAATGGCACACTATTGTAAACTCATCACTGATTATTATATAATCGTCTCTCAGCTCATCTGCTGTTTATGTAACAGCGGTCTGTTCTCTGAAGAAACTTCTTTACCAAAGCCAGATCTACTGTCGTCTTAAGTGTTACTTCACACTCTTTCTGTTCATAAGTGCATGAATAATGAAAAACAAAAAGCTTACAGTCATCTCTGTTCCTGAAGGCAATTTGGTGGAGTAAAGTGGGATTTTGTTCTTGTTAGTTTTTTTTCCTTGCACTGTTATGACACTTTAAACACCATGGTTTATACTATGTTTCTGGATATGTACCACAGTGATGCCATGCATATATCAAATCATCACTGTTCCTTGGTACTCCTACAGTCTTTTTTTTTTTTTTTTCTTTTTTGTATGGAGAAGAGTAAACTGGAAATATTGTTTATGTTGGAACATTGCTTGGTAATTTCAATTAATTCCATTTTCATGCCAGCTTTCCTCACAGTGTTAAAACATTAGTCCAGACAGGTTTAGCATTTCACAACCATGTGTCAATTGCGGAATGAGCCATTTGGACAAAATTTAAGAGTGAGAGAATGTGCCAGTTCTTTAGAATCCATGATTGTTTCCAACAAGCAGTTGCCTGTTCATAAGTACAGTATATGAACAGAAAAATGTTCAATCTTGCCAAACAACTGTTGTATTGTGTGGGAAGAGGGATGTTTGAAAATGAAACATATTGGATTTCGATCAGGTTCATAAAGGTCACAGTAATGATTGCTGGCCGTTTCAAGAGCCTGTCAGATATACTGATGGATGTGGAGAAATGCATGAGCTCCATGCAGACGGGCACTCAGATGGTGAAACTGCGTGGAGGATCCAAAGGCCTGGTGCGCTTTTTCTACTTGGACGAACACAAGTCCTGCATCCGCTGGCGACCCTCTAGGAAGAACGAGAAAGCCAAAATCTCAATCGACTCCATTCGGGAGGTGTGTGAGGGGAAGCAGTCTGAGATCTTTCAGCGGTATTCTGACGGTAGCTTTGATCCTAACTGCTGCTTCAGCATCTACTATGGCGAGCACATGGAGTCCCTTGACCTGGTGTCAGATGCATTCTATGTTCCATGTTTCTTAACTCTTCCCATTACATGGCTGAAGCAGACCTTCGCAGAGGCTGATAAGAATGGAGACGGCTGCCTCAGCATCAGTGAAGTCCTACAGCTCCTGCACAAGCTCAATGTCAACCTGCCCAGACAAAAAGTCAAACAGATGTTTAAGATCCTGTCAGAAGTTGCCAAAAATGTTATGAATGTCATCTTTTATGAATCCTTCAGCTATGCCATGTTGGATTGTTACAAAACACCATTGGATTCAATCTCTTCACTAGATCCGTCAGAAGACACCATAAATGAGGCAGACACCGATGACAACCAAGGCACTTTGGGATTTGAGGAGTTCTGCTCTTTCTATAAGATGATGTCGACGCGGCGTGATCTCTACCTGCTGATGCTCACCTACAGCAACCATAAAGACTACCTAGATACAGATGACATCAAACGCTTCCTTGAGACTGAACAAAAGATGACAAGTGTCTCAAAAGAGCACTGCCTCGAAATTGTGTCCAAGTTTGAGCCTTGTCCTGAAAACCAGACACTGGGTGTTCTGGGTATTGATGGTTTTACAAATTACATGCGCAGTCCTGCTGGGGACATCTTCAACCCAGAGCATTACGAGGTAAACCAGGACATGACGCAGCCCCTCAGTAACTATTTCGTTGCCTCCTCCCACAACACCTACCTGATGGGCGACCAGCTCATGTCCCAGTCTCGGGTGGATATGTACGCCTGGGTGCTGCAGGCCGGCTGCAGATGTGTGGAAGATGTTATTGAGACCATCAACAAATATGCATTCATCAAAAACCAGTATCCAGTGATTCTGTCCATTGAGAATCACTGCAGTGTCCCTCAGCAGAAGAAGATGGCTCAGTATCTGACTGAAGTGTTTGGTGATAAACTGGACACATCCTCCATCCCCACAGACCCATCTGGACTTCTGCCTTCACCTGAAGCCCTAAAAGGCAAAATACTCATCAAGGGTAAAAAACTGTCAGCAAATATAGATGAGAATGCAGAGGAGGGGGACGTGTCTGATGAAGACAGTGCAGATGAGATGGAAGACGACTGTAAGCTGATGAATGGAGATACATCTATGAACAGGAAGCAGGCAGAAAATGTTGCAAAGAAAAAATTAGATAACCTCATGAAGGAGTCAAAGATTCGTGACCGGGAAGATCCAGACAGCTTTACCATCGCATCCCTGCCGCCCACAGGAAAACATGACAAATCACCGCTGAAGATGTGTATAGTGTGGTTATTTAAGGACTTACTTGAGGGATATTTAACTACGCAGGACTGCACACAGAGGTTCTCGCAGCAGGGAAAAGCAGAAGACAGTACTGACACTGGAGATGAGGCCAACGTTGGTGGCAACAAACGTCTGGCTAAATCTTTCATGGGAAGCTTTTCCAAACGCAAGAAAAAGACGAGTAAACTGAGAAAATCCTCCAGTTTTGAGGATACAGACACAGATCAGGAGAGCTCGAGTGGGGCCTCTAAAGCACCAGTGCATCACAGCAGAAAGAAAAAAACCATGAAGTTGTCAAGAGCACTTTCTGATCTGGTATACACAAAATCTGTGGGCACACCAGACTTTGAGGCACAAGTGTTTATATGTCAGTGTACGCTATCACATCTCATGCATGTGGGTTGCACTGCAGTGGGCAGCTGCAGTTGGCAGGTGTCGTCGATGAGCGAGACCAAGGCCCATCAGTTAATTCAGCAGAAGCCGGTGCAGTTCATCCGATTCAACCAGCGCCAACTCTCCCGCATCTACCCCTCCCCTTATCGTGTGGACTCCAGCAACTTCAACCCACAGCCCTTCTGGAACGCTGGCTGCCATCTGGTTGCTTTGAACTACCAGTCAGAGGGCAGAGTGCTACAGCTCAACAGAGCCAAGTTTAATTGCAATGGCAACTGTGGTTACATCCAGAAACCTGCCTGTATGTGTGAAGGTTCTTTTAATCCAATGGCCGAGGATCCTTTACCAGGTCGATTGAAAAAACAATTGATTCTTAAGGTCATCAGTGGCCAGCAATTACCCAAACCCAAAGACTCCATGCTGGGTGACCGAGGAGAGATAATTGACCCATTTGTGGAAGTGGAGATTATTGGTCTACCAGTGGATTGCTGCAAAGAGCAAACCAGAGTGGTTGATGACAATGAGGTTTGGAAATGGGTTGGTTTTCTGTATTTTATGGAACACGAAAGTGGCATGAAGATCCATCATTTTGGAAGGGAACTGCTCACTCTTGTCTGGGTTGTTTTTCATAATGACACCAGGACTCTATATCTGATGGTTAACTGTGTTAAATACAATGAACAAGTCCAGAAGAATAACATTGAGTGTAAAGGTACTCTTACAGATTTAAGTTACACAGCCACTCTTAGGCAAGCAATTTCAGCTAGTGGCCTATTTTGTCTGGTTTGTGAGGGTCAAGCAGGATTTAATCCTATGTGGGAGGAGACGCTCGTCTTCACTCTTCACATGCCAGAGATTGCTCTTATACGCTTCCTGGTTTGGGATCATGACCCGATTGGCCAAGATTTTATTGGCCAGAGGACCATTGCCTTTAACAGCATGATTCCAGGTTACCGTCATGTGTATTTGGAAGGCATGGAGGAAGCTTCCATCTTTGTTCATGTTGTAGTGAATGACATCACTAGTAAGGTTCGAGCAGTCAGTGGTATAAAAGGACTGTTTCACAGAAACCCAAAGCAGGCATCTCTCGACAGCCATGCTGCTGCTCTGCTCAACCGTAAGACCACCTTCGGTGCTCACCTCCTGCGCCGCACAGCCAGTGCACCCACTAAGGGCCAACCCAATGTCAAGAGGGGCTTCCCTGAGATCTCCATTGACACAAAAGATTGCAGCTCGGAGGGTGCCAGTGAGGAGCGGGAATCGGAAGAGGGGCCACTTGTCCACCACAACGGAGATAGCGCATCTGCAAAATCATGGGGTCACGGCACCAACGGGCAGCTTCACCCTGATGACAGTAAAGGTAAGAGTACTTTCTTTTATCCTGAGCCCCGTGCTACACCTTACAGAAACAGGGGCACAGTGAGCGAACCTCTGAAGCGAGCCAACAAGTTGCGACTCCAGGATCCACTGGATGAGAAGCCGGGTGTGTTTGCACGTGTTGCTATCAACAGCTCTGGGCGGGTTGGGATGACTTCCAATTGCATAAAGTGTGTAATTGGCTCCAAGGAGAGTCCTGACTTGGAGAGGAAGGATACAGGCACCTTCATCCAGTGCACTCCTGCTCCCCTTAGACCTGAAAGGGCATCTCGGTCTCCAACAGCTTCCAGACAAGTTCAGCCAGAGCCCATACTCAAACCACAAGCCTTGGCCCAAACTGACTTAAACCCCAAATCAGACCCCCAGGCTCTACCAAAGCCTGTACCCTTACCTAGATCAAGGGCAAAGGTCCGGCAAACCTTGGCTGCACAACCCTTTCACCCCACTGAAGACCTAACTGTCAGAAATGCTCGCTCATGTAGCGTTCCACGCCGACTCCTCCATTCCCCATCCACCCCACCTCCTCCAATTCCAGACAGCAAAACCAGCCTTTGTCAGCAATGCCCTGCCCCAACCAACTATGGCAGCAACTGCAACGAGACTAGATCTGTGAATGACGTCAAGAGATTTTCTGACAGTGACTCTAGCAGCTGTGACAGTTTGGCCAGCCTTGATCTACCTACCATCTTCCCACCACGGGGAATGGAGAACCGGAAACGGGCCGCTGGAACACTGCAGCGTGAGATGAATGCTCTGTTTGCCCAGAAAATGGAGGAGATCCGCAGTAAATCCCCCTTGTTTTTCACTGCTGTGGGAACACTACTGGTAAAACCGGAGCCGGCCCAAGGCATAAGCGGCTGCTTAGGGCCCCCGTGGCTACCAGGGGGCCCCCAAGAGCACATGAAATGACAGCTTGATTTTTACAGCGCACAATCAGTTGCAGTTCTAGTGCTTCCTTCCCAATAATACTGTACAAATTGACGTACATTCGCGTCACATTAGGGCTGCACAATGTATTGTTTTAGCATCGATATGGCGATGTGACTATCGTGGATGCGCACATCGCAGGAATTGCAAAGTTTAACCAAAGTTGCACAGGTTTAAGTCCTGTCACACGGAGCCGCACAGACGCACGTGAACACCGAATTGCGCTCACTTCCGCATCTATTTGTGCTTGAACGGAGATATACACGCAGAATTATGTCAAAATGTCCTTGTAAACACAGTTGCTTATGGCTTAGGTAATGTCATGTATGTTGATTGGTTAAAAGTGTTGGATATGTGCAGAGGAATAAGTCAGGAAGACATGCTTAAGAGAGTTTAGTAAAAAGACGTGCAAGAGATAAAACACGTGTGTGTGGACCCCCTTATTTTCATGACAGGTAACGCAAACAAAGAAAACGGATGTGTATCATTATAAAGGATCTTTATTCGGATTCGGATTCCGCATTCGGACTTAAAGTCACAGCAGGCTTGTTGCTATATACTAATACTAATA

Function

symbol description
plch2 Enables phosphatidylinositol phospholipase C activity. Involved in phosphatidylinositol-mediated signaling. Predicted to be located in plasma membrane.

GO: NA

KEGG:

id description
K19006 PLCH; phosphatidylinositol phospholipase C, eta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_06518156_06558229.mRNA True 5659 mRNA 0.46 26 6517454 6558818

Neighbor

gene id symbol gene type direction distance location
CI01000050_06495478_06497593 NA coding upstream 19721 6495239 ~ 6497733 (+)
CI01000050_06413155_06428371 NA coding upstream 88471 6412512 ~ 6428983 (+)
CI01000050_06343875_06352994 MTHFR coding upstream 163213 6343319 ~ 6354241 (+)
CI01000050_06311242_06312395 NPPA coding upstream 204024 6311171 ~ 6313430 (+)
CI01000050_06307476_06308324 NA coding upstream 208758 6307476 ~ 6308696 (+)
CI01000050_06593242_06603104 NA coding downstream 34424 6593242 ~ 6603608 (+)
CI01000050_06610618_06631765 DPP9 coding downstream 51800 6610618 ~ 6631770 (+)
CI01000050_06683472_06696145 PPIH coding downstream 124198 6683016 ~ 6696569 (+)
CI01000050_06698115_06702523 YBX1 coding downstream 139297 6698115 ~ 6702523 (+)
CI01000050_06704526_06704754 NA coding downstream 145708 6704526 ~ 6705886 (+)
G215702 NA non-coding upstream 158624 6358573 ~ 6358830 (+)
G215728 NA non-coding upstream 237989 6279229 ~ 6279465 (+)
G215722 NA non-coding upstream 245070 6272147 ~ 6272384 (+)
G215667 NA non-coding upstream 344567 6171014 ~ 6172887 (+)
G215774 NA non-coding downstream 147192 6706010 ~ 6707922 (+)
G216552 NA non-coding downstream 248949 6807767 ~ 6808079 (+)
G216571 NA non-coding downstream 382220 6941038 ~ 6952420 (+)
CI01000050_06966299_06980426 NA non-coding downstream 402456 6964336 ~ 6980623 (+)
G216612 NA non-coding downstream 514901 7073719 ~ 7074023 (+)
G215539 NA other upstream 886251 5629610 ~ 5631203 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 1107806 5407585 ~ 5409417 (+)
CI01000050_04591548_04592778 NA other upstream 1924405 4589926 ~ 4593049 (+)
G214717 NA other upstream 2409174 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 2560410 3931890 ~ 3957044 (+)
G215773 NA other downstream 102370 6661188 ~ 6665703 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002213 plch2,LOC107602463 coding CM030136.1 CM030136.1 7325990 ~ 7378440 (+)