AMCG00002213 (plch2,LOC107602463)


Basic Information

Item Value
gene id AMCG00002213
gene name plch2,LOC107602463
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7325990 ~ 7378440 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002213
aTGTGGTTTACTCTTAACTCTCATGTTACGTGGCTGAAGCAGACGTTTACAGAAGCAGATAAAAATGGCGACGGCAGCTTGAGTATCAGTGAAGTTTTGCAGCTCATCCACAAACTGAACGTCAACCTTCCCAGACAGAAAGTGAAACAGATGTTTAAGGAAGCTGACACTGATGATAACCAGGGCACGCTGGGATTCGAGGAGTTCtgtgcattttacaaaatgatGTCAACAAGGCGAGACCTGTACCTGCTCATGCTCACCTACAGCAATCACAAGGACCACTTAGACACGGATGACTTGGTCCGCTTCCTGGAGATCGAACAGAAGATGACCAATGTTACCAAAGAGCATTGCGTGGAGATTGTTAACAAGTTTGAACCCTGCCCTGAAAACCAGCACCAAGGAGTCCTAGGCATTGATGGCTTCACCAACTACATGCGCAGTCCTGCTGGAGATATCTTCAACCCTGAACACTATGAAGTGAATCAAGACATGAATCAGCCCCTGTGTAATTACTTTATCGCCTCCTCTCACAACACGTACCTGATGGGCGACCAGCTGATGTCTCAGTCCCGAGTGGACATGTACGCCTGGGTGCTGCAGGCCGGCTGCCGCTGTGTGGAAGTTGACTGCTGGGACGGTCAGGACGGAGAGCCCATCGTCCACCATGGCTACACCCTGACTTCCAAAATCCTTTTCAAAGACGTCATTGAAACCATCAACAAGTATGCCTTTGTGAAGAACCAGTATCCAGTGATCCTGTCCATAGAAAACCACTGCAGCGTGCCACAGCAGAAGAAGATGGCTCAGTATCTGATTGAAGTGATGGGGGACAAACTGGATCTGTCTGATGTCCATATGGATGAATCTGGAACACTGCCCTCGCCCGAGAGCCTGAAAGGGAAAATTCTAGTTAAGGGAAAGAAGCTGCCGCCCAACATCGACGAGGACGCGGAAGAGGGGGACGTGTCTGATGAAGACAGTGCCGACGAGATCGAGGACGACTGTAAGCTGATGAATGGCGATACCTctgtaaacagaaaacaggtgGAGAATGTGGCAAAAAAGAAACTCGACTCTCTGATGAAGGAGTCAAAAATCCGGGATTGCGAGGACCCAGACAGCTTCACCATCGCTACGCTGCCACCTTCTGGAAAGCTTAGTGAGAAAGCTGCTCTGAAAAagCAAAAAAGCAGTCCAGTTGCAGGGGACAAGAACGTGGGGAAAGGTGAGGATGGCGTGGAGACCGGGGACGACAGTAACCCCAACACCAACAAGCGCCAGAGTCGATCCTTCATGGGCAGCTTCTCCAAACGCAAGaaaaAAACGAAGGTGAAGAAGTCTTCCAGCTTTGAGGATGAGGAGGACGATCAGGAGAGCTCAGGCAGCACGTCCCGCGCAGCCGTGCACTACAGCAGGATTAGTCGACAGAAGAAGACGATGAAGCTGTCACGGGCTCTGTCAGACCTCGTCAAGTACACCAAATCTGTTGGCATCCATGATATCGAGACACAAGTGGCCAGTAGCTGTCAGGTGTCCTCCCTCAGCGAGACCAAGGCCCATCAGATCATGCAGCAGAAACCAGCTCATTTCATCCACTTCAACCAGAGGCAGCTCTCCCGTATCTACCCCTCCTCCTACCGTGTAGACTCCAGCAACTACAACCCTCAGCCCTTCTGGAACGCCGGGTGCCATCTTGTTGCATTGAACTACCAGTCAGAAGGACGAGTGCTCCAGCTGAACCGAGCCAAGTTTTACAGCAATGGGAACTGCGGATACATTCTGAAACCCAAGTGCATGTGTGAAGGTGCCTTTAACCCTATGCTGGAGGACCCCCTCCCAGGTCAGTTGAAGAAACAGCTGGTTTTAAGGATAATCAGTGGGCAACAGCTGCCCAAGCCCAAAGACTCAATGCTGGGAGACAGGGGAGAGATTATCGACCCCTTCGTGGAGGTGGAGATAATAGGTCTGGCGGCGGACTGCTGCAAAGAGCAGACCAGGGTGGTGGATGATAATGGATTCAACCCCATGTGGGAGGAAACTCTGGTGTTCACGCTGCACATGCCTGAACTCGCTCTGGTCCGCTTCTTGGTGTGGGATCATGACCCGATTGGCCGTGACTTTATTGGGCAGAGGACAATAGCCTTCATCAGCATGATGCCAGgTTATCGGCACGTGTATTTGGAAGGTATGGAGGAGGCTTCCATCTTTGTTCATGTAGCTGTGAATGACATCACTGGTAAGgtcAGACCAGCCATCGGCATAAAAGGGCTGTTTCACAGAAACCCAAAGCAAGCTTCCCTCGACAGCCATGCTGCTGCGCAGCTCAGTCGTAAGCCCACGTTCGGTGCTCACCTGTTGCGCAGGACGGCCAGCGCCCCCACGAAGGGCCAGCAGAAGATCAAGAAGGGCTTTCCGGAGATCTCCATCGACACCAAAGACTACAGCTCGGAGGGTGCCAGCGAGGACAGGGAATCGGAGGACGCCTCTCAGCCTCGGTTTGATCGCGAGGCGGATTCAGCTGGGCCGGGCCCGCGGGACGGTACCAACGGGGAGCTGCATCCCGAGGGCATCCAAGGTAAGCCGTCGTCCTCTCGGGAGGGCAGGGGCAAGGCCACACCCCGCCACAGGGGGGCACTGAGCGAGCCGCTCCGGCGGGCCAACAGAGTGCGCCTCAATGACCCACTGGACGAGAAACAGGGCGTTTTTGCCCGGGTGGCAATCAACGGCTCTGGGCGGGTTGGTGTGGCCACCAACTGCATGAAGTGTGTGATTGGCTCCAAGGAGAGCCCAGATCTGGAGAAGAAGTTCACATCTTGCTTAGAAGATCCTGAGTTTGAGGAGGTCCAGCCTCCCCAGCCTGAAAGACCGCCTCCTCCACCGAGACGTGCCCAGCCTGTGCCTGAGCCCCAGCCCGAACCTTTGCCACAACCCCAGCCGCAGCCGCAGCCCAGGCCCCAGTCCAGGCCGTGTGCCAGGCAGACCCTGGAGGTCCATGGCAGTAACTACATTGCCGACCCCTCAGCTAGAAACGCCCGCTCCTGCAGCGTGCCCAGGAAGAGGAACACCTCCCCTGCTGGGCACGCACTAGATAGCAAAGCCCGCCTGCGCTGGCAGGGCTCGTCTCACCCCAACTACGGCAGTACCGTCAACCTGATGAAGGCGGCCTCCAACGGCCACAGCCTCTCTGACTCTGATTCCAGCAGCCTGGACAGCCTGGGCAGTCCCGAGTTACCCCCCCGTGTACCTGACAACAGACGCAGGGCAGTGGGCACCCTGCAGCGCGAGATGAATGCACTCTTTGTTCAAAAGCTTGAGGAAATCCGCAGTAAAAGTCCCATGTTTTTCACCGACCCCCACACCAAACCATTGCTAAGACCACTCTCCCCACTGCTCTCCCTGGAAACCATTGCTGAAGAGACTTCCTGCTCAGAGGAAAGAAAACGCTTCAGTTCTCGCCCCACATCTGACTCGAGTCCCACTAAATTTGTCTGTGAAGCGAAGGTCAACCTCCATGAATCTAGTACTTCTCCAAATCATTCAGCAATAGAACCTGTCGCTTCATCTCCTTTGCTACAAGGGGGAAAGCCCTGtctgacaaaagaaaaagatatcGGACAACCCTCAGCTTCAGAAATCACATCTGCATTTTCCCCCAATACCGTAACCCAGGAAGTTGGAAAACTCATCAAAGAGTCTAGGGAACATCATAGCAAAGACATTCCATTACCCAGCACTGACGAGACGGGAATCGGGTCTCACGTGTGTAGCAGTCATGCACATGTAAATGGACTTAGTCTAGATAATGGAACGGGTGCCTGTAAAACTCTACCAACACACTGGGACGAAGGCGAGGCGAAGTCTGAAACGAGCCAAAAGCAATACCAGACTCCCATAACAAGAAATGCTGTCAGCAACGGTAACGGCTCCCAAAGAACACCAGCTTTGAACGCATTTTTTAGCCTCGAGGAGCCCCAGGCATCACAGACCGGGCGACGTACGCTAGTGAGGAGATCCAAAAGTGAAGGCCATGTCCGGACATCGCTCTCCGGGAGTAGCCAGTCGCCCGTCCCAGAGGTGTACACTGACGTCACCATGAACGACCGGCTCTGGAGCAAGCTGGACAACAGCAGCCACAGGGACAGCGTGTCCTCCTCGTCGAGCATCTCCTCCACCGACACCGTCATCGATCTGTCCTTGCCAAACTTGGCCCGGAAGAGCCTGAGCAACCTGAACGCGACGCTGGATGATTCGGACGATGTGTTTGTGTCCAATCGCGTCGCCCGGCCCCGCTCTGCCACCACGGGCTGCGAGATGTCGAGGGTTAGCAAATGCAAGTCTAATCCGAACTTAAGAACTGAGGATGTGAGTGACATCAAGGATGAGCTGCAGCCCAGACCCTTGATCAAGGAGCCTTATAACCCTGGCAGATCCATGCAGAGGCGGCACACGTGGAGTCGGCTTTATATGGAAGGTCTCAAGTCATCGTCCGCTGCCAAGAAGTCGCCCGTGCCCATCGTCCGGGACATGGACAGCAGCTCCAAGTCGAAGAGCCTGGGAGACCTGACTTCAGACGATATCGCCTGCAACTTTGACAGCAAGTACAGGAGCATCAGCCGCAGCTTCATCACCAGGCCCATGCGGGATCAACGGAAGCCCCCGAAGAAAACCCAGGACGCTCTGATGGAGCAGCTCAAGAGGCTGACCGCCGTGGAGCCGCTCACCGCCAGCGACTTCGTCACACCAGcgcagcagcggcagcagcagcagcagcagcagcaggagcaggaagAGGAGATGTGTCTGCTGCGGAGGTCGTCCTCCAGGAGTCAGAGCAGGGTGCGCTACATCGCCAACAGGGCCAAGCAGGCGCAGGAGAGACAACGGCTGCAGAGCCTCGCCCAGCAGAGCGGCAGCCCCATCGAAGAGCGAGGGAACCCGGAGGGGGCCTGCTCTGTGGCCAGGAGCCCCTGCGCCAACTTGGACTTGGACCTTCTCAGCCAGCTCCCCCCAGCTCCCCCAGGCCAAAACTCCCAGGCAGCCGAGTCTGAGGTGTTCTTCATGTTAAAGCTCTGAGAAGTGGAAGGACCGTGTTAGAACTGAATCCTCTATTGAATTTCAAtggcagacatttatttttgttgttgtcgtcgtttgcgttttatttaatgtggcatatttttaaagcaatggatACTGATTTTTTTAGCATTTCGACTGTAACCCGTGATGCGATCTGTTTAACGGTCTTTGTCCATGCACTGAATTCATTATATCTCGTTGTGCAGCCTGAGTTCTTGGACACTTCTCTGGTCTCAAGACTTACCATCATAAGTATTGGCtttttttaaccctttaaaATTCACACCatttcaaaactttaaacaaGCTGACCACAAAACCAATGTGTCCCAGTATATAATTTGTATCAACACAAAAagcactgaaatatttactgttttatgATCTAGActaatttcagtttaatatatatCCAGGAACACTTTTAAATTGAGAATTCTCACCCTAACAAATATCTGCCCTTCAGACTAGGGTATCCTTCATTGGCTCCGGTGGTGGGATATGTACATTGTGTTTGTAACCTTCAATCTACTACAAAGAAACATGTAATGAGCAGTAAGGCtttatgtttcatttgtttACTGAAAGCAGCtatctttttaatgtaataaatatattgcacaTAAAGTTCTAGATATATGTAGGATAacactggaaataaatataaaaccactATGAGCACTGGTTATGAAGACTGGCACTGCTCTGTGAAAAGTAAGATCCAGGCTGGGCCTACATCAGTTTATCAGACCTCAAAACCAGCCTATCTGAACCCTTTTTGAAGTGgcaatattcaaatatatgtacaatttGTCATTAAACACTCTTTAGTTAGTGCCGTAACTTtgtctgattgttttttgttttaatatatctatttaacattatatttaaagagGACTCTGGTTGTAAATGATTAAAGACTAAAATAGGATATTTGCATAAGCGTGTCATAAGGATTATGGAAAGGGTTATCATATCTGGTGAAAATGGTACCGTACATGGGCATTTTTAAACACTCTGTTAATAATGTATGCAACTCTCTATCCACATTTACTAGACtcttgaaaaaaaatgcatcttatAATGGGATAAATTGTATACTTTTTCCTTCTTAATTTTCCCTGTCCTATTATACAACTCTTGTATGTAATATTGTTCCAGTTCTCTCATGGGCTGCGACATGAATAATCCTTTTTCTGTAAAGGCTGCTAGTGTGGTTGTGAATGGCAGGTCTCTGCTAACCAGCCTGTCTTGAGTCCTTCTTGATGTCTATAAAATAAGTTCATGAACTACAGTACTACAAAGACTATTGACCATCATTATATTAATCATTGagttcccccccaaaaaaatccaTTGCATGGGACTAATGCACAGAATAAAAATTGAAGAGgatttcttttctgttcttctcAATTTCCTGTTTGTCTGAGGGGGAGGGAATAATTGTGTTCAGTGTTCTGATGAGTGATAATGCCAATCAGTTCTGCATCTGATATTTTAAGacacattttgtcattttagacGGTATTTTATATGATGAGATGCTGTAAAGCACCTTTCTTAACTCGTACTGTATGCACTGCCATGCCAGTTTTCTGTATgagaaatgttttagaaaacatCTTAACTCTAGCTTGTGTAATTagaaatcatttaaatacatgtaaattactgtttttgttttgattttttttttttaatttttgatacCATATGTTTTAGTTATGGATCACCTTACGTTTGTCatctttctctttatttttttaatattttaggtGTAAAATTACTTAACCATTTCATGAATTGTATAGAATATTTACAAACATGACatgcaaaaaaatgtatattggacCTTTTGATCACTTAATGTAAATCag

Function

symbol description
plch2 Enables phosphatidylinositol phospholipase C activity. Involved in phosphatidylinositol-mediated signaling. Predicted to be located in plasma membrane.

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2-like isoform X4

GO: NA

KEGG:

id description
K19006 PLCH; phosphatidylinositol phospholipase C, eta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002213 True 6968 mRNA 0.49 20 7325990 7378440

Neighbor

gene id symbol gene type direction distance location
AMCG00002214 plch2,LOC107691057,LOC107710777,LOC107748961,LOC107595766 coding upstream 2089 7318975 ~ 7323901 (+)
AMCG00002211 mthfr coding upstream 134875 7178439 ~ 7191115 (+)
AMCG00002206 NA coding upstream 159163 7159632 ~ 7166827 (+)
AMCG00002205 NA coding upstream 168141 7156487 ~ 7157849 (+)
AMCG00002207 NA coding upstream 172669 7152473 ~ 7153321 (+)
AMCG00002216 NA coding downstream 4098 7382538 ~ 7390651 (+)
AMCG00002217 NA coding downstream 279818 7658258 ~ 7663689 (+)
AMCG00002224 NA coding downstream 549150 7927590 ~ 7937933 (+)
AMCG00002232 NA coding downstream 601864 7980304 ~ 8010540 (+)
AMCG00002231 NA coding downstream 638453 8016893 ~ 8022378 (+)
G121526 NA non-coding upstream 527947 6792976 ~ 6798043 (+)
G121417 NA non-coding upstream 998509 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 1048090 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 1755743 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 2050067 5243709 ~ 5275923 (+)
G121680 NA non-coding downstream 182626 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 268278 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 451367 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 532118 7910558 ~ 7917243 (+)
G121767 NA non-coding downstream 566925 7945365 ~ 7953624 (+)
AMCG00002190 acot7 other upstream 723382 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 2099334 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 3783813 3533814 ~ 3542177 (+)
G120742 NA other upstream 4366515 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 4471863 2852154 ~ 2854127 (+)
AMCG00002215 NA other downstream 15360 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 1360331 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 2465765 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 3189472 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 3336359 10714799 ~ 10753893 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_06518156_06558229 PLCH2 coding CI01000050 null 6517454 ~ 6558818 (+)