G121688 (ski,LOC106572818)


Basic Information

Item Value
gene id G121688
gene name ski,LOC106572818
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7646718 ~ 7648316 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU152524
ACTCACCCTGGAGGCTTTCCTCTTGTACTTGTTCGCGAAGTCAAATTTCTCTTTGATTTCGTCCAAAAGCTGCTCCAGGCGCCCCTTCTCCTCTTTGCCCGTGTAATCCTGGCTGAGGAGCACGTATGCCCTCCAATTGGCGGAGTCGAAGCCCCAGTGGCAAGTCCTGTTCTCCAAAGACTTGTGACTGTGGACCACGAACTTGTGCGTCGGGTACATGAGCCGACAGTCCATGCACTGGATGCAGGCTGCGTTTGGGTTGGTGTACAGCTCGGGCACGAACAGCCCCTTGCACTTGCCGAAACACTCGTGGTACACCTTGAAGCTCTTCTCcgtcagctccagctccagggaGCCCGAGAACTCTTTCTTGCAGTGCGGCGGGTAGGTGCCCCCGTAGATCAGGGCATTGCAGAGGCGCTCCGCGTCCGTTTTGGTGATGAGGCCGCACGAAGGCGCCGAGAAGGGCAAAATCCCCATGACTTTTAGGATCTCCAGCTGGTCCGCGGTGCACCTGGAGCAGTAGATGTGGAGCTCGTCGCACACGGAGTTGATCTGCTGCAGGGAGAAATCTCGCAGGACGGTGTTGAGGATCTGCGGCAGACAGAGCCTCTTCTCCCCGCCGACCACAAAGCAGGAGATGGTCTCGCTTTCCAGGACCGTCTCGCACCTCTCGGTGGAGCGGTCAGACGGGATGAAGAGCGGCCCGGGCATCACCGGCGGCGGCTGGATGGGGAGGTGAAGGACCGGTTCTGGGTCTTTGCCCTCTTTCTTGTACAGCATGTCCTGTTGCCATCTGGCCGAGAAAGCTGCCGGGCCGCCGAGGGAGCTCATAGAGCTCAGGTGAAACTGCTTCAGAGTTTGTTGCAGTCCTGGATGAGGTTGGAAGCTGGGGCGAGCTACAGTCTCCATGTTTTGCGTACTATAAGAAGAGCGAAACTTCCTTTGGCCGGGACGAAACTACAGCAACGAGAAATAAGCCCCAAAGGTCCCGGCTCCTTGTAAATCCAAGGTCTCCCAGAGTTAGCAAATGAGGAGAAGCGCTTCATGAAACATCCAGAAACAAGTCCCCGGGCAGTGCGTCTCTAGTCTGCCAGGCTAGGCGTGCGGCGACACCGGTGCGTCTTCCCCTGCAGTAGACTCCCTACTGTCCATAGCCACCAACGCTTCTGTCTAAATCCAcagcaaaggaaaaaagaaacgcTTTTCGCACCCACAAAAAGTATCCAGTTATTGGTCAGAGCTTTTGCCTGTCAGGAGATCCGAAAATGGTGAAGTCCATCCACTTTTCGCCTCTTTTCCGATTGTGTTCTGCAGTGGGGTAGAACTCACATCCACACAGTCTGCCCTTGCAGTGAGATATGTCTGTGTAGCTACAGCCagccagctctctctctctctctctctctctctctctccctcacagccCCCCCTtcctcagtgtttgtgtgtgtctggctcAGTCATTGAATCCCAGCCAAGTATGTGACTGACTCCCCAGGCTGGCTCTTCCAGGAACATGTCGTCACTCCCCCTCTTCTCTTCTCAGccttgtgctgctgctgctgctgctgc

Function

symbol description
ski Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; enzyme binding activity; and zinc ion binding activity. Involved in several processes, including SMAD protein signal transduction; negative regulation of osteoblast differentiation; and negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Acts upstream of or within negative regulation of Schwann cell proliferation. Located in PML body and centrosome. Part of protein-containing complex.

NR:

description
PREDICTED: ski oncogene

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152524 True 1575 lncRNA 0.56 2 7646718 7648316

Neighbor

gene id symbol gene type direction distance location
AMCG00002216 NA coding upstream 256067 7382538 ~ 7390651 (+)
AMCG00002213 plch2,LOC107602463 coding upstream 268278 7325990 ~ 7378440 (+)
AMCG00002214 plch2,LOC107691057,LOC107710777,LOC107748961,LOC107595766 coding upstream 322817 7318975 ~ 7323901 (+)
AMCG00002211 mthfr coding upstream 455603 7178439 ~ 7191115 (+)
AMCG00002206 NA coding upstream 479891 7159632 ~ 7166827 (+)
AMCG00002217 NA coding downstream 9942 7658258 ~ 7663689 (+)
AMCG00002224 NA coding downstream 279274 7927590 ~ 7937933 (+)
AMCG00002232 NA coding downstream 331988 7980304 ~ 8010540 (+)
AMCG00002231 NA coding downstream 368577 8016893 ~ 8022378 (+)
AMCG00002236 NA coding downstream 479881 8128197 ~ 8151854 (+)
G121680 NA non-coding upstream 83986 7561066 ~ 7562732 (+)
G121526 NA non-coding upstream 848675 6792976 ~ 6798043 (+)
G121417 NA non-coding upstream 1319237 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 1368818 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 2076471 5474136 ~ 5570247 (+)
G121722 NA non-coding downstream 181491 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 262242 7910558 ~ 7917243 (+)
G121767 NA non-coding downstream 297049 7945365 ~ 7953624 (+)
G121862 NA non-coding downstream 1168014 8816330 ~ 8816553 (+)
G121981 NA non-coding downstream 1600001 9248317 ~ 9313334 (+)
AMCG00002215 NA other upstream 235488 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 1044110 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 2420062 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 4104541 3533814 ~ 3542177 (+)
G120742 NA other upstream 4687243 2956908 ~ 2959475 (+)
AMCG00002245 NA other downstream 1090455 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 2195889 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 2919596 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 3066483 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 3709236 11357552 ~ 11359840 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036333 skia coding NC_007119.7 CM002892.2 17395929 ~ 17516448 (-)