XLOC_036333 (skia)


Basic Information

Item Value
gene id XLOC_036333
gene name skia
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17395929 ~ 17516448 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071007
GAGGCGACGCGCCGTGTCCGGCTGCAGCGATCTCTACTCGCAGGCAAAAACACGGATTTAAAGTTTGCGGATTGTGTATTTGACTCGTGAAATTGACGTGGGACAAGTTCGGCCTTTCCGTGGGATAGTTCTGCTGCAACTTGCGCGCTTTTGCTCGTGTTACACTTGAGTTTTCTGTCTGTGGATATGGACAGAAGAGAGCCCGCTGCAGGGGAAGAAGACGCGCCGGTGGAAACCTTCGTCTGAGCGGGGATTTGATGAAGCCCTGTGGGCCTTCTTGTGCTTGTTTTCACGGACTTGGATTTAGAGACGCAGAACCAGGACCTTTGAGTCGCATTTCTTGCCCGACACTTGGTTTCAACGACAACGCGCTGCGCGAAACATGGAAACAGTAGCGCGACAGAGTTTCCAGCCTCACCCGGGACTGCAACAAACTCTCAAACAGTTTCACCTGAGCTCCATGATCTCCCTCGGAGGACCGGCCGCGTTCTCGGCCAGGTGGCAACACGATTTGCTCTTCAAGAAGGACGGTAAAGACATCCCGGAGCCCGTGCTGCACCTCCCCCCGATGCAGCCTCCTCCGGTGATGCCCGGGCCGCTCTTCATCCCGTCCGACCGCTCAACCGAGAGGTGCGAGACGGTCCTGGAGGGTGAGACCATCTCGTGCTTCGTGGTGGGCGGCGAGAAGCGCCTGTGCCTGCCGCAGATCCTCAACACGGTGCTGCGGGATTTCTCGCTCCAGCAGATCAACTCTGTGTGCGACGACCTGCACATCTACTGCTCGCGCTGCACCGCCGACCAGCTGGAGATCCTGAAGGTGATGGGCATCCTGCCGTTTGCCGCGCCGTCCTGCGGGCTCATCACCAAGACGGACGCGGAGCGGCTATGCAACGCGCTCATCTATGGGGGCACGTACCCGCCGCACTCCAAGAAGGAGCTGTACGGCTCTATTGAGCTGGAACTCACCGAGAAGAGCTTCAAGATCTACCACGAGTGCTTCGGGAAGTGTAAGGGTCTGCTGGTCCCGGAGCTCTACACAAGTCCCAACGCGCCCTGCATCCAATGCATGGACTGCAGGCTCATGTACCCGACCCATAAATTCGTGGTGCACAGTCACAAATCGCTGGAGAACAGGACTTGCCATTGGGGCTTTGACTCGGCCAACTGGAGGGCGTATGTGCTCCTGAGTCCGGATTACACGGGGAAAGAGGAGAAAGCGCGTCTGGAGCAGCTCCTGGATGACATTAAGGAGAAATTTGATTTCTCCAATAAATACAAGCGGAAAGCATCACAGGCGTCTGATCCCATTCCTGCCAAGAAGCCCAAACACGATGACTTTCCAGCACAGTCACCCTCAGGAGACAAAGACAAGCAACCTGATTGGCTACGGTCCCTCTCAGCGTCAGCCAATAAGGGGCTCAACTGCATTCAACCCAGACAGAGACCGTCAGCCTTCAGGCCTTGGTCTCCAAACATCTCTGTTAGCGATAAAGACGGAGCAGGCAGACCCGCTAGCATGTTACGAGAAAGTTTCTACAACTACAAGAGTCTGGAAAGTGCCGTGGCCCCAAACGTGGCTCTAACACCGCCGCAGAAAGGAGGACAGGCCTCTCCATCGGCCCCCAGCAGCTCACATCCACATGGGGCAGAGAGTGAAGGTGCGAGTCGCGGGAGGAAGAGGAGGCTGACGGGCGACACTCAACCCAGTCCACAGCCCTGCGCCGCGGCCACCGCCAGCAAACCCCTGCCAGCCTCGCCAGAGGAGCACGAGTCAGATGTGGAGGTGGAGGTGGAGAGTCGAGAGGAATTAACGTCATCGCTTTCCTCGCTCTCCTCCCCATCGTTTCCCTCCTCAAGCTCAGCTAAGGACTTGAGCTCTCCCTCAGGCCCTGTGGCCACTTTACCAGCAGTAGTGACACCCGCCGCCGGACCCCCGGAGGGCCCCCTGCTGTCTGGGGGAGAGGGACACGCCATGAATAACCTGGAGTCAGAGCTGGAGACGCTGAGACAGGCGCTGGACAACGGCCTGGACTCAAAAGAATCCAAGGAAAAGTTTCTGCATGAGATCGTGAAGATGAGAGTGAAGCAGGAGGAGAAGCTCGGATCCGCATTACAGGCCAAACGGAGCCTCCAGCAGGAGCTGGAGTTCCTCCGTGTTGCGAAGAAGGAGAAGCTCCGTGAGGCGACAGAAGCGAAAAGGAACCTGCGCAAGGAGATCGAGCGCTTGCGTGCCGAAAGCGAGAGGAAGATGAGAGAGGCCAACGAGTCCCGTATGCGGCTGAAGAGAGAGCTGGAGCAGGCCAGACAGCTGCGGGTCTGTGACAAGGGCTGCGAGGCCGGACGCCTGAGGGCCAAATACTCTGCACAGATTGAAGACCTGCAAGTAAAGTTGCAGCACGCCGAGGCAGACCGAGAGCAGCTGAGAGCCGATCTGATCCATGAACGGGAGGCGCGGGAGCACCTGGAGAGAGTGGTCAAGGAGCTACAGGAACAGCTGTGGCCCAAAAGCCCCAGCAAGAATGGCACAGACGTGGCACACCCACCTGCCAAAGACTCCAACAACTGatcctctctctgtctcttgACTCCGCCCCAATCCACATCAACACCGCCCTGATTGACAGCACCGACCACCCAATCATGACAAACTAGCATGTGGGTGAGCCCCGCCCACCCGCCTCTCAGCCAGCGCAAAAGCAGAACATTTTTTGAGGGAAGTTAGACAACGAGAGCACTGAAATGCACCTCGCcagatgttttaaaaatgaaaaggaaaacaaaaatgcaaaaatcctTCAGAAAGAAAGAAGACAATAGCACAAAAGCTAACTGTGCCTGAAACTTGATACATTTTCAAATGAAGACTTTTCTATAAACAAAATTGGTGACGACAAATTTTACGTCAGTTTTTAAGGAGATCTTAGCATGCTGACCGCCCATCATCGTTTTTGAAGAGACAAGGACTCGCCATCATCATCGTCTTCATCCATTTTGAGGAAAAATCACTTCAAAATGAGCTATTTAAGAGACTTAGTGTGTATGAGATATTAAAAAAACTTATAAGAGCCTCAAATTTACCCCTCTTTTATATGTATGTACATGTCATGCTGGTTAAAAGAAGCCATGGAGACAAATGGTTACACACTTGCATCTTTAACTTTGTTAGAGATGGTCAGGAGAGCGTTGGAGGAGAGCTAGAGGTGAAGTTCAGCCCTACTGAAAGGGAGCGAGATTTGAGTTCAAGTAAGTGTTATGATCAAGCCATGAGCACTTTCTTTTAATGGTAAACAAGATGTCGTGCGATTGGGGGTCAGAACCAATCGGCAAGGAGTTTTGTGGCTCCTGGTCTCAGTGAGGGCTTTCCTCTCGACGTCACACGCGAGGGCTGAGGTGTTGACGATAGTCGGCCATTTTGAGGAATAAACTAAAAGCATAAAAAACGGCTTCTAGGGCAGGAGGTGTCATGTGATCAAGAACCACAAATTGTTGTTTTTAAGTAAATTATAatgtaaatatgaaaatgtttctttcgctttgtttttgtttttttacattacaaaataatgaatcgcactttgtcattattacaaaataCTGTCTAAATGCATTACGCTCCCACACTCTCCCACACATTTATCCCGTTTTTTTTAGTATTCCTAagtataaaattgaaataaacctTTTGTTAATTATATGCAGTTCTAATAAATGCAATGTAATCATGTGTTTAAGACGAACTATTGTAAATAAAACgcaagatttttaaaaaagtccTACATGCTTGCTTGCTGAACGGTGCGCAAAGCCGTTCCCTCAATCTGACATTATTAATGAATTCATTTATCATAGCTATCGATATATGATCATAATTGTTGCGAAAGTGTTATTGTTACTGTCCTACAGGCTTCGAACGGTTTCGAATCAAATTTAAAACCGTCGGCAATGAATAGGACACACGAATCGgtaaaagcagtgtttctcaaccacggtcctggaggaccaccaacactgcaagttttggatgtctcctttttATTGTCACACTCATTACAGCTCTTTTAGTCTCTCCTAATGAGCGGATCTGAACcaggtgtgtttgtttgagaagacatggaaaatgtgcagagctggtggtaaTTCAGGaacatcactgagaaacacttGCTAAAAGGGAGTCTAAATGTTAATGCAGGTGCTCCTCTCAGCTGTGAACAAGATGATGaggatgaacgaatgaatgaaagacgGTCACACACTTAGCTGGGAGAGATTTTGttgaaaaaacatatatttttaagtgATTTATATACATTGGGTACAATGCAATCAGAATGTATGTTACATTTTggctctttttgttgttgttggatgTTTTTTCAAGATTGTGTGAATATTTTATTGCGTATGTTCCTCCTTTCAATAGCAAGCTTATGTAATTTCTTTCATATGCATggaattttaaaaagataaagtctgccattcatatattcattattGGGCATTAAAACTGTATATGtcgtttttttattgtgttatgcAAGATAAAGCGTTGTTTTTAACTACAAAGGAAAAACAGAACCCACTTAACAATAAATTCCAGCTCTTGAACGCAACATTAACGGCATTACTCTTGGGCTAAAAACAAACCTTATGTGCATATGCAATGCTGGAGACCCGCAAGTGCCTGTTTTAGGTCCATTGGGGTTTCTAGAAGTGGAACAATTATTGAGCCTGTTCCTATGCTGACCGTCCGGTCAGATGAAGAGAACAGGACGTCCCATTTGCACTGTCATTTGGGGAGCTTTAGTGCTTTTTGCACATTTAGGCTCACCCCATTTTGCCAGAACTTGACTATCACTGCTTAGGAGCAAGCCGCAGCTTATTTGATAGGTTTTAATGCCAGTTTGTCAGTATTCCTTTGATATATTTTTCCTTTGAAAGTTTAtgaatagttaaataaaaagaaaaatgcatAGCAGAGTTTAATGCACCAATTGCCACTGGTAAAGAACAATTTAAAATCTTATACTAAGAtagctttttaaatgtatgttggAATAATTAAACTCTTTTCTTTCTCtgtttttaagaataaaaaatatatttaagagGTTACTTTTTGCTATAGATATAAAAAAGAGCCTTTGAATCGATACATTGCAGGCTACGGCAAAGATGAGGTCTAGATGAAGCTCAGTGTCTTAATAGTAGCAAGAGGCTGTGCATTTTTACAGACCAAAAaatcattcataaaaaaaaaaaaaaactttcagatgAGGTTGTTTTGTAGTTGTTTTTACAAGCAAATTGATATGTGCAGTTCACTTTGTTCAtggttttctattaaaaaaagggAGAAACTGATCACAGAGGCTCCTTTGCTCCCAATGTAATACtaaaaatgtggattttttttccgTAAAAGAGCCATTTTTGCTAactaaaaaaagctaaaaacagCAATAACAACATCACTGATGAATGATGATCAGGATTAGCCAGTTTAACGATGAAAGTACAAATTCACCAATGTATATagctgtatttgtttattttacaagaATTGTATCATAAATGTATAttgcgtttcttttttttttcagaatgagaaAACATACATCATAGTTGTTATCTTttacattgtgttgtttttttaagcaaaaagaaagaaaatgttttatttcaaagGTTGTATTCCCAGCGCAAGCATATTCAGTCATTTTTTTCTGCAATGTTCAGTAGAAACGTTTCATTTTTCAGGTTTTCACTGTTCAACTAAATATCAAAGACATCAGTTCTGGTTGAATCAGACCTTCAGATTCTTGTTTAAATCTGTTCTTTATTCTCCCATGCCGATATATCTTAGCCCTTCACTGCTGCTATAACAATATACTATAAACTTTGCAACTCttgaaattatttttatgtaagaGATTAATGTATGCTTTCTTCTTCTACTGATGCCGCTTATACAACTTGGATCTGGCCAATTTCTCCCCCTTAGACCTCCCTTCTCCCCCCACATGGACTATAATGTAAGATAGAGAGCTCTATGAGATTAGAGTTGAAAGTAGTTCGGCTTATATACTGCAGTGTCAGGATGTACAGTGTATAGACCCATAATCCAAAATAAAGTTTTGTCCAGAa

Function

symbol description
skia Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Acts upstream of or within several processes, including cardiac conduction; cartilage development; and heart looping. Located in nucleus. Is expressed in several structures, including brain; lens; presumptive diencephalon; solid lens vesicle; and tail bud. Used to study craniosynostosis. Orthologous to human SKI (SKI proto-oncogene).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0051216 cartilage development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0046332 SMAD binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990715-9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Acts upstream of or within several processes, including cardiac conduction; cartilage development; and heart looping. Located in nucleus. Is expressed in several structures, including brain; lens; presumptive diencephalon; solid lens vesicle; and tail bud. Used to study craniosynostosis. Orthologous to human SKI (SKI proto-oncogene).

Ensembl:

ensembl_id ENSDARG00000042151

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071007 True 6147 mRNA 0.45 7 17395929 17516448

Neighbor

gene id symbol gene type direction distance location
XLOC_036332 BX465215.1 coding downstream 143575 17252239 ~ 17252354 (-)
XLOC_036331 pola2 coding downstream 211447 17174796 ~ 17184482 (-)
XLOC_036330 mrps36 coding downstream 228099 17163494 ~ 17167830 (-)
XLOC_036329 rab3c coding downstream 328565 17055292 ~ 17067364 (-)
XLOC_036328 CR759968.2 coding downstream 607303 16742091 ~ 16788626 (-)
XLOC_036334 prkcz coding upstream 37865 17554313 ~ 17771755 (-)
XLOC_036335 NA coding upstream 143149 17659597 ~ 17661194 (-)
XLOC_036336 NA coding upstream 261412 17777860 ~ 17784911 (-)
XLOC_036337 si:ch211-150o23.2 coding upstream 270860 17787308 ~ 17790965 (-)
XLOC_036338 st6galnac5b coding upstream 283932 17800380 ~ 17822259 (-)
XLOC_036322 NA non-coding downstream 782266 16609622 ~ 16613663 (-)
XLOC_036323 CU467861.2 non-coding downstream 783912 16611935 ~ 16612017 (-)
XLOC_036318 NA non-coding downstream 811317 16566548 ~ 16584612 (-)
XLOC_036319 NA non-coding downstream 818179 16570519 ~ 16577750 (-)
XLOC_036355 AL844185.2 non-coding upstream 1068245 18584693 ~ 18584807 (-)
XLOC_036356 NA non-coding upstream 1077619 18594067 ~ 18599356 (-)
XLOC_036359 NA non-coding upstream 1255159 18771607 ~ 18773009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_04165584_04232583 SKIA, SKI coding CI01000010 null 4165584 ~ 4232583 (+)
bowfin (Amia calva) G121688 ski,LOC106572818 non-coding CM030136.1 CM030136.1 7646718 ~ 7648316 (+)