RNA id: TCONS_00071007


Basic Information

Item Value
RNA id TCONS_00071007
length 6147
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_036333
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17395929 ~ 17516448 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGCGACGCGCCGTGTCCGGCTGCAGCGATCTCTACTCGCAGGCAAAAACACGGATTTAAAGTTTGCGGATTGTGTATTTGACTCGTGAAATTGACGTGGGACAAGTTCGGCCTTTCCGTGGGATAGTTCTGCTGCAACTTGCGCGCTTTTGCTCGTGTTACACTTGAGTTTTCTGTCTGTGGATATGGACAGAAGAGAGCCCGCTGCAGGGGAAGAAGACGCGCCGGTGGAAACCTTCGTCTGAGCGGGGATTTGATGAAGCCCTGTGGGCCTTCTTGTGCTTGTTTTCACGGACTTGGATTTAGAGACGCAGAACCAGGACCTTTGAGTCGCATTTCTTGCCCGACACTTGGTTTCAACGACAACGCGCTGCGCGAAACATGGAAACAGTAGCGCGACAGAGTTTCCAGCCTCACCCGGGACTGCAACAAACTCTCAAACAGTTTCACCTGAGCTCCATGATCTCCCTCGGAGGACCGGCCGCGTTCTCGGCCAGGTGGCAACACGATTTGCTCTTCAAGAAGGACGGTAAAGACATCCCGGAGCCCGTGCTGCACCTCCCCCCGATGCAGCCTCCTCCGGTGATGCCCGGGCCGCTCTTCATCCCGTCCGACCGCTCAACCGAGAGGTGCGAGACGGTCCTGGAGGGTGAGACCATCTCGTGCTTCGTGGTGGGCGGCGAGAAGCGCCTGTGCCTGCCGCAGATCCTCAACACGGTGCTGCGGGATTTCTCGCTCCAGCAGATCAACTCTGTGTGCGACGACCTGCACATCTACTGCTCGCGCTGCACCGCCGACCAGCTGGAGATCCTGAAGGTGATGGGCATCCTGCCGTTTGCCGCGCCGTCCTGCGGGCTCATCACCAAGACGGACGCGGAGCGGCTATGCAACGCGCTCATCTATGGGGGCACGTACCCGCCGCACTCCAAGAAGGAGCTGTACGGCTCTATTGAGCTGGAACTCACCGAGAAGAGCTTCAAGATCTACCACGAGTGCTTCGGGAAGTGTAAGGGTCTGCTGGTCCCGGAGCTCTACACAAGTCCCAACGCGCCCTGCATCCAATGCATGGACTGCAGGCTCATGTACCCGACCCATAAATTCGTGGTGCACAGTCACAAATCGCTGGAGAACAGGACTTGCCATTGGGGCTTTGACTCGGCCAACTGGAGGGCGTATGTGCTCCTGAGTCCGGATTACACGGGGAAAGAGGAGAAAGCGCGTCTGGAGCAGCTCCTGGATGACATTAAGGAGAAATTTGATTTCTCCAATAAATACAAGCGGAAAGCATCACAGGCGTCTGATCCCATTCCTGCCAAGAAGCCCAAACACGATGACTTTCCAGCACAGTCACCCTCAGGAGACAAAGACAAGCAACCTGATTGGCTACGGTCCCTCTCAGCGTCAGCCAATAAGGGGCTCAACTGCATTCAACCCAGACAGAGACCGTCAGCCTTCAGGCCTTGGTCTCCAAACATCTCTGTTAGCGATAAAGACGGAGCAGGCAGACCCGCTAGCATGTTACGAGAAAGTTTCTACAACTACAAGAGTCTGGAAAGTGCCGTGGCCCCAAACGTGGCTCTAACACCGCCGCAGAAAGGAGGACAGGCCTCTCCATCGGCCCCCAGCAGCTCACATCCACATGGGGCAGAGAGTGAAGGTGCGAGTCGCGGGAGGAAGAGGAGGCTGACGGGCGACACTCAACCCAGTCCACAGCCCTGCGCCGCGGCCACCGCCAGCAAACCCCTGCCAGCCTCGCCAGAGGAGCACGAGTCAGATGTGGAGGTGGAGGTGGAGAGTCGAGAGGAATTAACGTCATCGCTTTCCTCGCTCTCCTCCCCATCGTTTCCCTCCTCAAGCTCAGCTAAGGACTTGAGCTCTCCCTCAGGCCCTGTGGCCACTTTACCAGCAGTAGTGACACCCGCCGCCGGACCCCCGGAGGGCCCCCTGCTGTCTGGGGGAGAGGGACACGCCATGAATAACCTGGAGTCAGAGCTGGAGACGCTGAGACAGGCGCTGGACAACGGCCTGGACTCAAAAGAATCCAAGGAAAAGTTTCTGCATGAGATCGTGAAGATGAGAGTGAAGCAGGAGGAGAAGCTCGGATCCGCATTACAGGCCAAACGGAGCCTCCAGCAGGAGCTGGAGTTCCTCCGTGTTGCGAAGAAGGAGAAGCTCCGTGAGGCGACAGAAGCGAAAAGGAACCTGCGCAAGGAGATCGAGCGCTTGCGTGCCGAAAGCGAGAGGAAGATGAGAGAGGCCAACGAGTCCCGTATGCGGCTGAAGAGAGAGCTGGAGCAGGCCAGACAGCTGCGGGTCTGTGACAAGGGCTGCGAGGCCGGACGCCTGAGGGCCAAATACTCTGCACAGATTGAAGACCTGCAAGTAAAGTTGCAGCACGCCGAGGCAGACCGAGAGCAGCTGAGAGCCGATCTGATCCATGAACGGGAGGCGCGGGAGCACCTGGAGAGAGTGGTCAAGGAGCTACAGGAACAGCTGTGGCCCAAAAGCCCCAGCAAGAATGGCACAGACGTGGCACACCCACCTGCCAAAGACTCCAACAACTGatcctctctctgtctcttgACTCCGCCCCAATCCACATCAACACCGCCCTGATTGACAGCACCGACCACCCAATCATGACAAACTAGCATGTGGGTGAGCCCCGCCCACCCGCCTCTCAGCCAGCGCAAAAGCAGAACATTTTTTGAGGGAAGTTAGACAACGAGAGCACTGAAATGCACCTCGCcagatgttttaaaaatgaaaaggaaaacaaaaatgcaaaaatcctTCAGAAAGAAAGAAGACAATAGCACAAAAGCTAACTGTGCCTGAAACTTGATACATTTTCAAATGAAGACTTTTCTATAAACAAAATTGGTGACGACAAATTTTACGTCAGTTTTTAAGGAGATCTTAGCATGCTGACCGCCCATCATCGTTTTTGAAGAGACAAGGACTCGCCATCATCATCGTCTTCATCCATTTTGAGGAAAAATCACTTCAAAATGAGCTATTTAAGAGACTTAGTGTGTATGAGATATTAAAAAAACTTATAAGAGCCTCAAATTTACCCCTCTTTTATATGTATGTACATGTCATGCTGGTTAAAAGAAGCCATGGAGACAAATGGTTACACACTTGCATCTTTAACTTTGTTAGAGATGGTCAGGAGAGCGTTGGAGGAGAGCTAGAGGTGAAGTTCAGCCCTACTGAAAGGGAGCGAGATTTGAGTTCAAGTAAGTGTTATGATCAAGCCATGAGCACTTTCTTTTAATGGTAAACAAGATGTCGTGCGATTGGGGGTCAGAACCAATCGGCAAGGAGTTTTGTGGCTCCTGGTCTCAGTGAGGGCTTTCCTCTCGACGTCACACGCGAGGGCTGAGGTGTTGACGATAGTCGGCCATTTTGAGGAATAAACTAAAAGCATAAAAAACGGCTTCTAGGGCAGGAGGTGTCATGTGATCAAGAACCACAAATTGTTGTTTTTAAGTAAATTATAatgtaaatatgaaaatgtttctttcgctttgtttttgtttttttacattacaaaataatgaatcgcactttgtcattattacaaaataCTGTCTAAATGCATTACGCTCCCACACTCTCCCACACATTTATCCCGTTTTTTTTAGTATTCCTAagtataaaattgaaataaacctTTTGTTAATTATATGCAGTTCTAATAAATGCAATGTAATCATGTGTTTAAGACGAACTATTGTAAATAAAACgcaagatttttaaaaaagtccTACATGCTTGCTTGCTGAACGGTGCGCAAAGCCGTTCCCTCAATCTGACATTATTAATGAATTCATTTATCATAGCTATCGATATATGATCATAATTGTTGCGAAAGTGTTATTGTTACTGTCCTACAGGCTTCGAACGGTTTCGAATCAAATTTAAAACCGTCGGCAATGAATAGGACACACGAATCGgtaaaagcagtgtttctcaaccacggtcctggaggaccaccaacactgcaagttttggatgtctcctttttATTGTCACACTCATTACAGCTCTTTTAGTCTCTCCTAATGAGCGGATCTGAACcaggtgtgtttgtttgagaagacatggaaaatgtgcagagctggtggtaaTTCAGGaacatcactgagaaacacttGCTAAAAGGGAGTCTAAATGTTAATGCAGGTGCTCCTCTCAGCTGTGAACAAGATGATGaggatgaacgaatgaatgaaagacgGTCACACACTTAGCTGGGAGAGATTTTGttgaaaaaacatatatttttaagtgATTTATATACATTGGGTACAATGCAATCAGAATGTATGTTACATTTTggctctttttgttgttgttggatgTTTTTTCAAGATTGTGTGAATATTTTATTGCGTATGTTCCTCCTTTCAATAGCAAGCTTATGTAATTTCTTTCATATGCATggaattttaaaaagataaagtctgccattcatatattcattattGGGCATTAAAACTGTATATGtcgtttttttattgtgttatgcAAGATAAAGCGTTGTTTTTAACTACAAAGGAAAAACAGAACCCACTTAACAATAAATTCCAGCTCTTGAACGCAACATTAACGGCATTACTCTTGGGCTAAAAACAAACCTTATGTGCATATGCAATGCTGGAGACCCGCAAGTGCCTGTTTTAGGTCCATTGGGGTTTCTAGAAGTGGAACAATTATTGAGCCTGTTCCTATGCTGACCGTCCGGTCAGATGAAGAGAACAGGACGTCCCATTTGCACTGTCATTTGGGGAGCTTTAGTGCTTTTTGCACATTTAGGCTCACCCCATTTTGCCAGAACTTGACTATCACTGCTTAGGAGCAAGCCGCAGCTTATTTGATAGGTTTTAATGCCAGTTTGTCAGTATTCCTTTGATATATTTTTCCTTTGAAAGTTTAtgaatagttaaataaaaagaaaaatgcatAGCAGAGTTTAATGCACCAATTGCCACTGGTAAAGAACAATTTAAAATCTTATACTAAGAtagctttttaaatgtatgttggAATAATTAAACTCTTTTCTTTCTCtgtttttaagaataaaaaatatatttaagagGTTACTTTTTGCTATAGATATAAAAAAGAGCCTTTGAATCGATACATTGCAGGCTACGGCAAAGATGAGGTCTAGATGAAGCTCAGTGTCTTAATAGTAGCAAGAGGCTGTGCATTTTTACAGACCAAAAaatcattcataaaaaaaaaaaaaaactttcagatgAGGTTGTTTTGTAGTTGTTTTTACAAGCAAATTGATATGTGCAGTTCACTTTGTTCAtggttttctattaaaaaaagggAGAAACTGATCACAGAGGCTCCTTTGCTCCCAATGTAATACtaaaaatgtggattttttttccgTAAAAGAGCCATTTTTGCTAactaaaaaaagctaaaaacagCAATAACAACATCACTGATGAATGATGATCAGGATTAGCCAGTTTAACGATGAAAGTACAAATTCACCAATGTATATagctgtatttgtttattttacaagaATTGTATCATAAATGTATAttgcgtttcttttttttttcagaatgagaaAACATACATCATAGTTGTTATCTTttacattgtgttgtttttttaagcaaaaagaaagaaaatgttttatttcaaagGTTGTATTCCCAGCGCAAGCATATTCAGTCATTTTTTTCTGCAATGTTCAGTAGAAACGTTTCATTTTTCAGGTTTTCACTGTTCAACTAAATATCAAAGACATCAGTTCTGGTTGAATCAGACCTTCAGATTCTTGTTTAAATCTGTTCTTTATTCTCCCATGCCGATATATCTTAGCCCTTCACTGCTGCTATAACAATATACTATAAACTTTGCAACTCttgaaattatttttatgtaagaGATTAATGTATGCTTTCTTCTTCTACTGATGCCGCTTATACAACTTGGATCTGGCCAATTTCTCCCCCTTAGACCTCCCTTCTCCCCCCACATGGACTATAATGTAAGATAGAGAGCTCTATGAGATTAGAGTTGAAAGTAGTTCGGCTTATATACTGCAGTGTCAGGATGTACAGTGTATAGACCCATAATCCAAAATAAAGTTTTGTCCAGAa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0051216 cartilage development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0046332 SMAD binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990715-9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Acts upstream of or within several processes, including cardiac conduction; cartilage development; and heart looping. Located in nucleus. Is expressed in several structures, including brain; lens; presumptive diencephalon; solid lens vesicle; and tail bud. Used to study craniosynostosis. Orthologous to human SKI (SKI proto-oncogene).

Ensembl:

ensembl_id ENSDART00000100667

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072434 lncRNA downstream 782266 16609622 ~ 16613663 (-) False XLOC_036322
TCONS_00072433 lncRNA downstream 782299 16609622 ~ 16613630 (-) False XLOC_036322
TCONS_00072432 lncRNA downstream 782300 16609622 ~ 16613629 (-) False XLOC_036322
TCONS_00072015 lncRNA downstream 782312 16609622 ~ 16613617 (-) False XLOC_036322
TCONS_00072020 lncRNA upstream 143149 17659597 ~ 17661194 (-) False XLOC_036335
TCONS_00071009 lncRNA upstream 143737 17660185 ~ 17661172 (-) True XLOC_036335
TCONS_00072021 lncRNA upstream 261412 17777860 ~ 17782923 (-) False XLOC_036336
TCONS_00071010 lncRNA upstream 261412 17777860 ~ 17784911 (-) False XLOC_036336
TCONS_00072435 lncRNA upstream 266009 17782457 ~ 17784706 (-) True XLOC_036336
TCONS_00071005 mRNA downstream 211447 17174796 ~ 17184482 (-) True XLOC_036331
TCONS_00071004 mRNA downstream 228099 17163494 ~ 17167830 (-) True XLOC_036330
TCONS_00071003 mRNA downstream 228110 17163494 ~ 17167819 (-) False XLOC_036330
TCONS_00071001 mRNA downstream 328565 17055292 ~ 17067364 (-) False XLOC_036329
TCONS_00071002 mRNA downstream 331686 17055293 ~ 17064243 (-) True XLOC_036329
TCONS_00071008 mRNA upstream 37865 17554313 ~ 17771755 (-) True XLOC_036334
TCONS_00071013 mRNA upstream 270862 17787310 ~ 17790916 (-) False XLOC_036337
TCONS_00071014 mRNA upstream 283932 17800380 ~ 17822259 (-) True XLOC_036338
TCONS_00071015 mRNA upstream 404981 17921429 ~ 17926814 (-) False XLOC_036339
TCONS_00071016 mRNA upstream 405345 17921793 ~ 17926620 (-) True XLOC_036339
TCONS_00071006 other downstream 143575 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00070990 other downstream 730283 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00070989 other downstream 738843 16632735 ~ 16657086 (-) False XLOC_036324
TCONS_00070985 other downstream 782820 16613029 ~ 16613109 (-) True XLOC_036322
TCONS_00070984 other downstream 783048 16612808 ~ 16612881 (-) False XLOC_036322
TCONS_00071054 other upstream 998592 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 1006633 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071065 other upstream 1068245 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071074 other upstream 1698277 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071076 other upstream 1698381 19214829 ~ 19216657 (-) True XLOC_036363

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_04165584_04232583.mRNA True 2181 mRNA 0.59 7 CI01000010 4165584 ~ 4232583 (+)
bowfin (Amia calva) TU152524 True 1575 lncRNA 0.56 2 CM030136.1 7646718 ~ 7648316 (+)