RNA id: CI01000010_04165584_04232583.mRNA


Basic Information

Item Value
RNA id CI01000010_04165584_04232583.mRNA
length 2181
RNA type mRNA
GC content 0.59
exon number 7
gene id CI01000010_04165584_04232583
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4165584 ~ 4232583 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAAACAGTAACACGACAGAGTTTCCAGCCTCACCCGGGACTGCAACAAACTCTCAAACAGTTTCACCTGAGCTCCATGAGCTCTCTTGGAGGACCGGCCGCTTTCTCGGCCAGATGGCAACACGATTTGCTCTTTAAGAAGGATGGCAAAGACGTCCCGGAGCCCGTGCTGCATCTCCCCCCGATGCAGCCTCCTCCGGTGATGCCAGGGCCGCTCTTCATCCCGTCCGACCGCTCCACGGAGAGGTGCGAGACGGTCCTGGAGGGCGAGACCATCTCGTGCTTCGTGGTGGGCGGCGAGAAGCGCTTGTGCCTGCCGCAGATTCTCAACACGGTGCTGCGGGATTTCTCGCTTCAGCAGATCAACTCGGTGTGCGACGACCTGCACATTTACTGCTCGCGCTGCACCGCCGACCAGCTGGAGATCCTGAAGGTGATGGGCATCCTGCCGTTCTCCGCGCCGTCCTGCGGACTCATCACCAAGACGGACGCGGAGCGCCTGTGCAATGCGCTCATCTACGGGGGCACGTACCCGCCGCACTCCAAGAAGGAGCTGTACGGCTCCATCGAGCTGGAACTCACCGAGAAGAGCTTCAAGATCTATCATGAGTGCTTCGGGAAGTGTAAGGGTCTGCTGGTCCCGGAGCTCTACACGAGTCCCAACGCGCCCTGCATCCAATGCATGGACTGCAGGCTCATGTACCCGACCCAGAAATTCGTGGTGCACAGTCACAAATCGCTGGAGAACAGGACTTGCCATTGGGGCTTTGACTCTGCAAATTGGAGGGCGTATGTGCTCCTGAGTCCGGATTACACGGGGAAAGAGGAGAAAGCGCGTCTGGAGCAGCTCCTGGATGACATCAAGGAGAAATTTGACTTCGCCAATAAATACAAGCGGAAAGCATCACGGGCGTCTGATCCCATTCCTGCCAAGAAGTCCAAACACGATGACTTTCCAGCACAGTCGCCCTCTGGAGACAAAGACAAGCAACCCGATTGGCTTCGATCCCTCTCTGCATCAGCCAATAAGGGGCTCAACTGCATCCAGCCCAGACAGAGACCGTCTGCCTTCAGGCCATGGTCTCCTAACATCTCTGTTGGCGATAAGGAAGGAGCCGGCAGACCTGCTAGTATGTTACGTGACAGCTTCTACAACTACAAGAGCCTGGAGAGTGCTGTGGCCCCCAACGTAGCTCTGACGCCCCTCCAGAAAGGAGGACAGGCCTCTCCTTCTGCCCCCAGCAGCTCACACCCACATGGGGCGGAAAGCGAGGGTGCCAGCCGTGGGAGGAAGAGGCGGCTGACAGGAGAGACCCACCCTAGCCCACAACCCTGCCCCTCGGCCACTGCCAGCAAGCCCCTGCCGCCCTCTCAGGAGGAGCGAGACTCTGACGTGGAGGTGGAAGTGGAGAGCCGTGAAGAATTCACCTCATCACTTTCCTCACTCTCCTCCCCATCTTTTACGTCCTCGAGCTCCGCTAAAGACTTGAGCTCTCCCTCCGGCCCCGGACCCACCTTACCAGCAGTTCTTACGCCAGCCAGCGGGCTCCCTGAGGGCCCCCTGGTGTCTGGAGGGGAGGGCCACGCCATGACGAACCTGGAGTCGGAGCTGGAGACGCTGAGGCAGGCACTGGACAGCGGCCTGGACTCAAAAGAGTCAAAGGAGAAATTTCTACACGAGATAGTCAAGATGAGGGTAAAACAGGAAGAGAAGCTCGGATCCGCCTTACAGGCCAAACGAAGTCTGCAGCAGGAGCTGGAGTTTCTCCGCGTTGCTAAGAAGGAGAAGCTCCGTGAGGCGACCGAGGCCAAGAGGAACCTGCGCAAGGAGATCGAACGCCTGCGTGCCGAAAGTGAGAGGAAGATGAGAGAGGCCAATGAGTCACGCATTCGGCTGAAGAGAGAGCTGGAGCAGGCCAGACAGCTACGAGTGTGCGACAAGGGCTGTGAGGCTGGCCGTCTGCGAGCCAAGTACTCTGCGCAGATTGAGGATCTGCAAGTAAAGTTGCAGCATGCCGAGGCAGACCGAGAGCAGCTGAGAGCCGATCTGATGCAGGAGCGGGAGGCACGGGAGCACCTGGAGAGAGTGGTCAAGGAGCTACAGGAACAGCTGTGGCCCAAAAGCCCCAGCAAGAACGGCACAGACGCACCACCCCCACCCGCCAAAGACTCCAACAAC

Function

GO:

id name namespace
GO:0048666 neuron development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71638 lncRNA upstream 70197 4092045 ~ 4095387 (+) True G62895
TU71636 lncRNA upstream 104394 4054595 ~ 4061190 (+) True G62893
TU71605 lncRNA upstream 184098 3969811 ~ 3981486 (+) True G62871
TU71604 lncRNA upstream 196153 3966589 ~ 3969431 (+) False G62871
TU71607 lncRNA upstream 198168 3966589 ~ 3967416 (+) False G62871
TU71672 lncRNA downstream 58502 4291085 ~ 4291311 (+) True G62923
TU71674 lncRNA downstream 64778 4297361 ~ 4297627 (+) True G62925
TU71675 lncRNA downstream 67110 4299693 ~ 4299922 (+) True G62926
TU71679 lncRNA downstream 72482 4305065 ~ 4305265 (+) True G62930
TU71683 lncRNA downstream 74338 4306921 ~ 4326352 (+) True G62934
CI01000010_04046204_04137642.mRNA mRNA upstream 27942 4046204 ~ 4137642 (+) True CI01000010_04046204_04137642
CI01000010_04025764_04026729.mRNA mRNA upstream 138318 4025361 ~ 4027266 (+) True CI01000010_04025764_04026729
CI01000010_04010515_04020837.mRNA mRNA upstream 144686 4010515 ~ 4020898 (+) True CI01000010_04010515_04020837
CI01000010_03952874_03957173.mRNA mRNA upstream 208340 3952874 ~ 3957244 (+) True CI01000010_03952874_03957173
CI01000010_03920171_03935066.mRNA mRNA upstream 229725 3920171 ~ 3935859 (+) True CI01000010_03920171_03935066
CI01000010_04368541_04374080.mRNA mRNA downstream 135888 4368471 ~ 4374174 (+) True CI01000010_04368541_04374080
CI01000010_04377762_04378990.mRNA mRNA downstream 144564 4377147 ~ 4379082 (+) True CI01000010_04377762_04378990
CI01000010_04437892_04443935.mRNA mRNA downstream 204846 4437429 ~ 4444446 (+) True CI01000010_04437892_04443935
CI01000010_04534309_04549864.mRNA mRNA downstream 301595 4534178 ~ 4549959 (+) True CI01000010_04534309_04549864
CI01000010_04609294_04611679.mRNA mRNA downstream 376606 4609189 ~ 4611710 (+) True CI01000010_04609294_04611679
TU71580 other upstream 225639 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 271791 3890095 ~ 3893793 (+) True G62838
TU70047 other upstream 834398 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 965676 3194155 ~ 3199031 (+) True G61462
TU69273 other upstream 3218040 946794 ~ 946871 (+) True G60842
TU71738 other downstream 215589 4448172 ~ 4449327 (+) True G62983
TU71841 other downstream 408258 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 408258 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU72215 other downstream 1462862 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 1464840 5697423 ~ 5699465 (+) False G63403

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071007 True 6147 mRNA 0.45 7 NC_007119.7 17395929 ~ 17516448 (-)
bowfin (Amia calva) AMCG00002219 True 1398 mRNA 0.57 8 CM030136.1 7565399 ~ 7582098 (-)