RNA id: TU72214



Basic Information


Item Value
RNA id TU72214
length 1655
RNA type TUCP
GC content 0.48
exon number 2
gene id G63403
representative False

Chromosome Information


Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5695445 ~ 5707085 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCACCTGTAAAAGTATTGTATAAAGTAACTTTAAAGTAAAGTTTTAAGAAACTATTATAAAAGATTGTCTCTAATAAGAAGACCACAACACTAAAATATCTGCATATAGTGTACTGAAATGAAGATATTTTATGATATTAATTCTAATAAAAATGTCTAGGAATCTTAAAATTATATCAGTTTATATTTGTGTACTTTCCCTACTGAAAAATCTTGCATTGTGGGTCATGTTTTTGGATGGTGGTGTTTCAAGGATTTTTAAGTAGCTTAATCCGCAAAATTGCCTTGGCCAACCAGCTTCACAAGAAAGACCATGCTAATGGCAATGTCTGTGCTGGTGAACAAACAGCTTGGCTCTGCTCCTCTAGCTAGACCAGCACCAATCCAGCACTAACCAGCAGCAATTAGTCTAAGTTGGTCTTATCAATAGGGTTATCAGAGGTGCAGGGATGCTCAAACCCGTAATGGAGGTCAGCTCCATGGATGGCTGAGTGTCGGTGACCTCTATCATGATGCTGGTGTTCAGGGACGACTTATCCTGATTCAAGGATCCGTGGTTGTTATTATCAGTCTCGCCAGCACCCATAGTGGCCTGTGGGGACTTCTGGAGTGTGCTCTCAGTGAGCTGTAGAGTTGCAGGTTCTGAGTCCTGAGGTGGGTTTTTACAGGGGGAATTGGCTTGTTTTGGCTCTGATGACTCAGAGTTGTCTGGTTTGTTCTGCCTCTGTTCAAGCACTCTGCTCTCTGGACTGATCTCTCCATCATTCTTTGATTCCTTTTCATCTCCCTCATTCCCTGGCCTTTGTTCTCTACTGTCAACACCACCGTCTCCCTGTTGTGTCTCTTTGACCCTGGCATCTGTGTGAGATTCGCGATGGCGTGGGCGTCGGGGTCTGGGCCCCATATCAGGGGTCAGCGTGTCCCCCATCGCAGGTGGCCTGTACTTACGGACTGCCCGCTGCCGCCTGTTCCCATTCAGTCTGGGGCAATGGTTGTTGATGTCTAGAGTGCCCTCGGGTGAGGTCTTTGATTCAGACGACTCTGTTAGGGGTAGATTCAGCGTCACTGGGGGTTCAGGAAGGGATATGTCCGCAGGCATTGGTGGCTCCGGTATCGGAATAGCTAAAGGGGGTTCGGGGATAGAAATGGATAGAGATTGCTCATCTACAGGCATGTCCATAGGCATGGGTGGTTCTAAGGTAGCTTCTGGCAAGGTGGTGGTTGTAGAGGTCTCGATGGCTCTGCGCATGCTATCAGATGGCGATATCCCAGTGGTCCGGTGGTGATGGCAGCCAGGTGGTCCATCGTGCTCTTCACTCGGGCTGTTGAACAGGATCTCACGGCTGGACATCTGCCTGTGGCGGCGCAGTTGGCTGGTCCTCTGCTCCCAAACTGACATGGTCAACCTCCTCCTTCTCTCTCTCCTGGACATGAAAGAGTTAGAGGCATTGAGTGGACGGGCATCAGCCAGATTCTCTGCATCCTCAAAGGAGTAGGCCGCACGGCTCCGGTGAATTGCACGCTTCCTGTACAGGTAGGGCCTCCTCCTCCTCCTGAGGAAAAAAAGAGAGAGGACACTCAATGATACTGGGTGGCAAAAGAAATATTTCAACAACCATGCCACAACAATTGCTTACATTACCTTATCACTCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72210 lncRNA upstream 3415 5691435 ~ 5694008 (+) True G63399
TU72194 lncRNA upstream 37984 5659219 ~ 5659439 (+) True G63390
TU72189 lncRNA upstream 51626 5644656 ~ 5645797 (+) True G63386
TU72186 lncRNA upstream 54346 5642877 ~ 5643077 (+) True G63384
TU72133 lncRNA upstream 59191 5634187 ~ 5638232 (+) True G63332
TU72220 lncRNA downstream 16251 5715716 ~ 5717250 (+) True G63405
TU72261 lncRNA downstream 181730 5881195 ~ 5881600 (+) True G63442
TU72262 lncRNA downstream 183303 5882768 ~ 5883651 (+) True G63443
TU72134 lncRNA downstream 388774 6088239 ~ 6089177 (+) True G63333
TU72128 lncRNA downstream 399953 6099418 ~ 6101358 (+) True CI01000010_06093805_06101291
CI01000010_05523602_05535371.mRNA mRNA upstream 161731 5523516 ~ 5535692 (+) True CI01000010_05523602_05535371
CI01000010_05494740_05504597.mRNA mRNA upstream 192162 5493967 ~ 5505261 (+) True CI01000010_05494740_05504597
CI01000010_05477048_05482911.mRNA mRNA upstream 214122 5476525 ~ 5483301 (+) True CI01000010_05477048_05482911
CI01000010_05414058_05426498.mRNA mRNA upstream 270736 5414058 ~ 5426687 (+) True CI01000010_05414058_05426498
CI01000010_05359191_05385419.mRNA mRNA upstream 311739 5359191 ~ 5385684 (+) True CI01000010_05359191_05385419
CI01000010_05789479_05790006.mRNA mRNA downstream 88867 5788332 ~ 5790204 (+) False CI01000010_05789479_05790006
CI01000010_05819188_05855120.mRNA mRNA downstream 119723 5819188 ~ 5855163 (+) True CI01000010_05819188_05855120
CI01000010_05859214_05887437.mRNA mRNA downstream 159749 5859214 ~ 5888267 (+) True CI01000010_05859214_05887437
CI01000010_05902969_05911426.mRNA mRNA downstream 203504 5902969 ~ 5912165 (+) True CI01000010_05902969_05911426
CI01000010_06014142_06037829.mRNA mRNA downstream 314677 6014142 ~ 6038450 (+) True CI01000010_06014142_06037829
TU71841 other upstream 1043430 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other upstream 1045656 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU71738 other upstream 1248096 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 1757478 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 1803630 3890095 ~ 3893793 (+) True G62838
TU72216 other downstream 4616 5704081 ~ 5707085 (+) True G63403
TU72219 other downstream 8506 5707971 ~ 5717250 (+) False G63405
TU72237 other downstream 57488 5756953 ~ 5757934 (+) True G63420
TU72351 other downstream 675093 6374558 ~ 6374667 (+) False G63524
TU72352 other downstream 675093 6374558 ~ 6374667 (+) True G63524

Expression Profile