RNA id: TU71842


Basic Information

Item Value
RNA id TU71842
length 432
RNA type TUCP
GC content 0.50
exon number 4
gene id CI01000010_04640858_04683752
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4640516 ~ 4683778 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGGCAAAGTGTAAAAATGGCGTCCATCATGGAGGGGCCGCTGAGCAAATGGACTAACGTCATGAAGGGGTGGCAGTATCGCTGGTTCGTACTGGACTATAACGCCGGGTTGCTGTCATATTATACTTCCAAGGACAAGATGATGCGTGGCTCTAGAAGAGGCTGTGTGCGACTTCGGGGAGCTGTGATTGGAATCGATGACGAGGACGACAGCACTTTCACCATTACCGTGGACCAGAAGACTTTCCATTTTCAGGCCCGTGACGCAGATGAGCGGGAGAAGTGGATTCATGCCTTAGAGGGGACGATTCTACGCCACACCCTTCAGCGGGTAAGAGCCACATCTAGGCCACATGTACCATGATTACACCTCAGTCAGACTGGTAAACAATCTTCTCTAAATTATGCTTAAAGACCTCATTACATTTTGG

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K20465 OSBPL9_10_11, ORP9_10_11; oxysterol-binding protein-related protein 9/10/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71816 lncRNA upstream 49702 4590169 ~ 4591139 (+) True G63058
TU71857 lncRNA upstream 68347 4572277 ~ 4572494 (+) True G63078
TU71849 lncRNA upstream 83542 4556992 ~ 4557299 (+) True G63070
TU71848 lncRNA upstream 85860 4554752 ~ 4554981 (+) True G63069
TU71814 lncRNA upstream 88438 4552199 ~ 4552403 (+) True G63056
TU71876 lncRNA downstream 120454 4772221 ~ 4773699 (+) True G63096
TU71917 lncRNA downstream 227257 4879024 ~ 4879521 (+) True G63131
TU71920 lncRNA downstream 249666 4901433 ~ 4901642 (+) True G63134
TU71938 lncRNA downstream 294698 4946465 ~ 4946668 (+) True G63149
TU71941 lncRNA downstream 301775 4953542 ~ 4953763 (+) True G63151
CI01000010_04614357_04631136.mRNA mRNA upstream 9381 4614229 ~ 4631460 (+) True CI01000010_04614357_04631136
CI01000010_04609294_04611679.mRNA mRNA upstream 29131 4609189 ~ 4611710 (+) True CI01000010_04609294_04611679
CI01000010_04534309_04549864.mRNA mRNA upstream 90882 4534178 ~ 4549959 (+) True CI01000010_04534309_04549864
CI01000010_04437892_04443935.mRNA mRNA upstream 196395 4437429 ~ 4444446 (+) True CI01000010_04437892_04443935
CI01000010_04377762_04378990.mRNA mRNA upstream 261759 4377147 ~ 4379082 (+) True CI01000010_04377762_04378990
CI01000010_04686730_04692395.mRNA mRNA downstream 34893 4686660 ~ 4692633 (+) True CI01000010_04686730_04692395
CI01000010_04696294_04717129.mRNA mRNA downstream 44527 4696294 ~ 4717222 (+) True CI01000010_04696294_04717129
CI01000010_04735645_04749008.mRNA mRNA downstream 83878 4735645 ~ 4749224 (+) True CI01000010_04735645_04749008
CI01000010_04753467_04770912.mRNA mRNA downstream 101464 4753231 ~ 4771674 (+) True CI01000010_04753467_04770912
CI01000010_04803003_04849985.mRNA mRNA downstream 151236 4803003 ~ 4849985 (+) True CI01000010_04803003_04849985
TU71738 other upstream 191514 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 700896 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 747048 3890095 ~ 3893793 (+) True G62838
TU70047 other upstream 1309655 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 1440933 3194155 ~ 3199031 (+) True G61462
TU72215 other downstream 1043678 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 1045656 5697423 ~ 5699465 (+) False G63403
TU72216 other downstream 1052314 5704081 ~ 5707085 (+) True G63403
TU72219 other downstream 1056204 5707971 ~ 5717250 (+) False G63405
TU72237 other downstream 1105186 5756953 ~ 5757934 (+) True G63420

Expression Profile