RNA id: TU71920


Basic Information

Item Value
RNA id TU71920
length 210
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G63134
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4901433 ~ 4901642 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGGATTCGTAAACACCTCTGATTGGCCATTGTGTTCATGCGCTTATCGGGTATGTCTGTGATTGGCTTCAATGATAACTCTAAATATGTATATTTATACTGTATGTATTTCTGTCATGACAACTCCCAGAGTGTTTAGCATGGCAATGGGTATGACAATGTTGATATGTTTGGTCAAGTACAGGACTTGCTACTGCCAATACATAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71917 lncRNA upstream 21912 4879024 ~ 4879521 (+) True G63131
TU71876 lncRNA upstream 127734 4772221 ~ 4773699 (+) True G63096
TU71816 lncRNA upstream 310294 4590169 ~ 4591139 (+) True G63058
TU71857 lncRNA upstream 328939 4572277 ~ 4572494 (+) True G63078
TU71849 lncRNA upstream 344134 4556992 ~ 4557299 (+) True G63070
TU71938 lncRNA downstream 44823 4946465 ~ 4946668 (+) True G63149
TU71941 lncRNA downstream 51900 4953542 ~ 4953763 (+) True G63151
TU71900 lncRNA downstream 53601 4998938 ~ 4999075 (+) True G63116
TU71952 lncRNA downstream 81974 4983616 ~ 4992490 (+) True G63162
TU71982 lncRNA downstream 113460 5015102 ~ 5018123 (+) True CI01000010_05012978_05018219
CI01000010_04871254_04873119.mRNA mRNA upstream 27515 4870540 ~ 4873918 (+) True CI01000010_04871254_04873119
CI01000010_04803003_04849985.mRNA mRNA upstream 51448 4803003 ~ 4849985 (+) True CI01000010_04803003_04849985
CI01000010_04753467_04770912.mRNA mRNA upstream 129759 4753231 ~ 4771674 (+) True CI01000010_04753467_04770912
CI01000010_04735645_04749008.mRNA mRNA upstream 152209 4735645 ~ 4749224 (+) True CI01000010_04735645_04749008
CI01000010_04696294_04717129.mRNA mRNA upstream 184211 4696294 ~ 4717222 (+) True CI01000010_04696294_04717129
CI01000010_04934550_04955403.mRNA mRNA downstream 32214 4933856 ~ 4956630 (+) False CI01000010_04934550_04955403
CI01000010_05012978_05018219.mRNA mRNA downstream 109737 5011379 ~ 5018346 (+) False CI01000010_05012978_05018219
CI01000010_05047527_05065421.mRNA mRNA downstream 145885 5047527 ~ 5066870 (+) True CI01000010_05047527_05065421
CI01000010_05185530_05200227.mRNA mRNA downstream 283479 5185121 ~ 5200514 (+) True CI01000010_05185530_05200227
CI01000010_05238328_05242974.mRNA mRNA downstream 335387 5237029 ~ 5243396 (+) True CI01000010_05238328_05242974
TU71841 other upstream 247440 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other upstream 249666 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU71738 other upstream 452106 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 961488 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 1007640 3890095 ~ 3893793 (+) True G62838
TU72215 other downstream 793803 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 795781 5697423 ~ 5699465 (+) False G63403
TU72216 other downstream 802439 5704081 ~ 5707085 (+) True G63403
TU72219 other downstream 806329 5707971 ~ 5717250 (+) False G63405
TU72237 other downstream 855311 5756953 ~ 5757934 (+) True G63420

Expression Profile