RNA id: TU71849


Basic Information

Item Value
RNA id TU71849
length 308
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G63070
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4556992 ~ 4557299 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTTTTGAACTGCAAGAGTTTTACACATTTTTATTAAAATATCTCTGATTGTGCTCATCAGAAAGAAGAAAGTCATACACACCTAGGATGGCTTGAGTGTGAGTAAAGCTTGGGCTAATTTTTATTTGAAAGTGAACTAATCCTTTAAGTAGCAAATCAGCATTTCTGAAGGATTATGTGACTGAAGACTGGAGTAATGATACTGAAAATTATAAAAAAGAAAAAAGAAAAAATAAATAAAAAAATAAAAAAAAAATCAGACAGACAGATAGACAGAAGAAACTTATTTCAAACACCATATACCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71848 lncRNA upstream 2011 4554752 ~ 4554981 (+) True G63069
TU71814 lncRNA upstream 4589 4552199 ~ 4552403 (+) True G63056
TU71811 lncRNA upstream 12134 4544659 ~ 4544858 (+) True G63053
TU71810 lncRNA upstream 12540 4544222 ~ 4544452 (+) True G63052
TU71764 lncRNA upstream 76417 4475671 ~ 4480575 (+) True G63006
TU71857 lncRNA downstream 14978 4572277 ~ 4572494 (+) True G63078
TU71816 lncRNA downstream 32870 4590169 ~ 4591139 (+) True G63058
TU71876 lncRNA downstream 214922 4772221 ~ 4773699 (+) True G63096
TU71917 lncRNA downstream 321725 4879024 ~ 4879521 (+) True G63131
TU71920 lncRNA downstream 344134 4901433 ~ 4901642 (+) True G63134
CI01000010_04534309_04549864.mRNA mRNA upstream 7033 4534178 ~ 4549959 (+) True CI01000010_04534309_04549864
CI01000010_04437892_04443935.mRNA mRNA upstream 112546 4437429 ~ 4444446 (+) True CI01000010_04437892_04443935
CI01000010_04377762_04378990.mRNA mRNA upstream 177910 4377147 ~ 4379082 (+) True CI01000010_04377762_04378990
CI01000010_04368541_04374080.mRNA mRNA upstream 182818 4368471 ~ 4374174 (+) True CI01000010_04368541_04374080
CI01000010_04165584_04232583.mRNA mRNA upstream 324409 4165584 ~ 4232583 (+) True CI01000010_04165584_04232583
CI01000010_04609294_04611679.mRNA mRNA downstream 51890 4609189 ~ 4611710 (+) True CI01000010_04609294_04611679
CI01000010_04614357_04631136.mRNA mRNA downstream 56930 4614229 ~ 4631460 (+) True CI01000010_04614357_04631136
CI01000010_04640858_04683752.mRNA mRNA downstream 83217 4640516 ~ 4683778 (+) False CI01000010_04640858_04683752
CI01000010_04686730_04692395.mRNA mRNA downstream 129361 4686660 ~ 4692633 (+) True CI01000010_04686730_04692395
CI01000010_04696294_04717129.mRNA mRNA downstream 138995 4696294 ~ 4717222 (+) True CI01000010_04696294_04717129
TU71738 other upstream 107665 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 617047 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 663199 3890095 ~ 3893793 (+) True G62838
TU70047 other upstream 1225806 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 1357084 3194155 ~ 3199031 (+) True G61462
TU71841 other downstream 83542 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 83542 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU72215 other downstream 1138146 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 1140124 5697423 ~ 5699465 (+) False G63403
TU72216 other downstream 1146782 5704081 ~ 5707085 (+) True G63403

Expression Profile