RNA id: CI01000010_04609294_04611679.mRNA


Basic Information

Item Value
RNA id CI01000010_04609294_04611679.mRNA
length 628
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000010_04609294_04611679
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4609189 ~ 4611710 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATTAATGCTATGTAATTATTGTGTAAAGCTACAACGCACAGTGAATGCGTATGCATGTGCAGTAAGAGAGAATATATTGACATTTCACAAAAAACTTATAGTGATGAGCCGTATAACCTCTTTCTTGCGAAGAACATTTGGAGTAGTAAAAGAACATATCGGCACAGATCATTTAGGAAATAAATATTACTTCATACCCGAGCAGAAGTCATGGACGGGACAGGTCATTCGGTCAAGGCGCCTAGTAGAAGCAGCAAATCCAAAAGAGTTTGAGTACATGGAAGGAAGCATTCCTTCTGAATGGGACGCTTGGATCAGAGGCAGGCGAAAACAGCCACCTACTATAGAGGAGTTGCTAAAGAATGAACGCTACAGGGAGCAGATCAAAATCAAAGCTGGAGAGGCAGGGGAAAGGGATAAAGCTCTGCAGGCCAAAGAGTATGAGGAAGGTCTGGTGGCCCAGCCTGTTCAGACTCAAGTCAAAGGTCATGCTTCTGCCACACAGTTTGGGCAGTCTGAATTCAGTGAGGACCCCGTAAGCACTGCCAACACATTCCAGCCAGGGTCCTGGACACCTCCAGGAAACAAAAAATAGGACTACATAAATCCTCCTTTGCCATCTTCAA

Function

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K18160 NDUFAF2; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71816 lncRNA upstream 18050 4590169 ~ 4591139 (+) True G63058
TU71857 lncRNA upstream 36695 4572277 ~ 4572494 (+) True G63078
TU71849 lncRNA upstream 51890 4556992 ~ 4557299 (+) True G63070
TU71848 lncRNA upstream 54208 4554752 ~ 4554981 (+) True G63069
TU71814 lncRNA upstream 56786 4552199 ~ 4552403 (+) True G63056
TU71876 lncRNA downstream 160511 4772221 ~ 4773699 (+) True G63096
TU71917 lncRNA downstream 267314 4879024 ~ 4879521 (+) True G63131
TU71920 lncRNA downstream 289723 4901433 ~ 4901642 (+) True G63134
TU71938 lncRNA downstream 334755 4946465 ~ 4946668 (+) True G63149
TU71941 lncRNA downstream 341832 4953542 ~ 4953763 (+) True G63151
CI01000010_04534309_04549864.mRNA mRNA upstream 59230 4534178 ~ 4549959 (+) True CI01000010_04534309_04549864
CI01000010_04437892_04443935.mRNA mRNA upstream 164743 4437429 ~ 4444446 (+) True CI01000010_04437892_04443935
CI01000010_04377762_04378990.mRNA mRNA upstream 230107 4377147 ~ 4379082 (+) True CI01000010_04377762_04378990
CI01000010_04368541_04374080.mRNA mRNA upstream 235015 4368471 ~ 4374174 (+) True CI01000010_04368541_04374080
CI01000010_04165584_04232583.mRNA mRNA upstream 376606 4165584 ~ 4232583 (+) True CI01000010_04165584_04232583
CI01000010_04614357_04631136.mRNA mRNA downstream 2519 4614229 ~ 4631460 (+) True CI01000010_04614357_04631136
CI01000010_04640858_04683752.mRNA mRNA downstream 28806 4640516 ~ 4683778 (+) False CI01000010_04640858_04683752
CI01000010_04686730_04692395.mRNA mRNA downstream 74950 4686660 ~ 4692633 (+) True CI01000010_04686730_04692395
CI01000010_04696294_04717129.mRNA mRNA downstream 84584 4696294 ~ 4717222 (+) True CI01000010_04696294_04717129
CI01000010_04735645_04749008.mRNA mRNA downstream 123935 4735645 ~ 4749224 (+) True CI01000010_04735645_04749008
TU71738 other upstream 159862 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 669244 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 715396 3890095 ~ 3893793 (+) True G62838
TU70047 other upstream 1278003 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 1409281 3194155 ~ 3199031 (+) True G61462
TU71841 other downstream 29131 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 29131 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU72215 other downstream 1083735 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 1085713 5697423 ~ 5699465 (+) False G63403
TU72216 other downstream 1092371 5704081 ~ 5707085 (+) True G63403

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070999 True 1835 mRNA 0.38 4 NC_007119.7 16732834 ~ 16738204 (-)