RNA id: TU71941


Basic Information

Item Value
RNA id TU71941
length 222
lncRNA type intronic
GC content 0.27
exon number 1
gene id G63151
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4953542 ~ 4953763 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAAATTATCGATTTTTCGTATATGCCAAAAATCATTAGGATATTAAGTAAAGATCATGTTCCATGAAGATATTTTGTTTCCTACCGTAAATATATCAAAAATGTATTTTTGTGAGTGGATATGCATTGCTAAGGACTTCATTTGGATAACTTTAAAGGCGATTTTCTCAATATTTAGATTTTTTTTTAGATTTTCAATATACAGATAGTTGTATCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71938 lncRNA upstream 6874 4946465 ~ 4946668 (+) True G63149
TU71920 lncRNA upstream 51900 4901433 ~ 4901642 (+) True G63134
TU71917 lncRNA upstream 74021 4879024 ~ 4879521 (+) True G63131
TU71876 lncRNA upstream 179843 4772221 ~ 4773699 (+) True G63096
TU71816 lncRNA upstream 362403 4590169 ~ 4591139 (+) True G63058
TU71900 lncRNA downstream 1480 4998938 ~ 4999075 (+) True G63116
TU71952 lncRNA downstream 29853 4983616 ~ 4992490 (+) True G63162
TU71982 lncRNA downstream 61339 5015102 ~ 5018123 (+) True CI01000010_05012978_05018219
TU72160 lncRNA downstream 616408 5570171 ~ 5579186 (+) True G63359
TU72129 lncRNA downstream 637613 5591376 ~ 5591852 (+) True G63328
CI01000010_04871254_04873119.mRNA mRNA upstream 79624 4870540 ~ 4873918 (+) True CI01000010_04871254_04873119
CI01000010_04803003_04849985.mRNA mRNA upstream 103557 4803003 ~ 4849985 (+) True CI01000010_04803003_04849985
CI01000010_04753467_04770912.mRNA mRNA upstream 181868 4753231 ~ 4771674 (+) True CI01000010_04753467_04770912
CI01000010_04735645_04749008.mRNA mRNA upstream 204318 4735645 ~ 4749224 (+) True CI01000010_04735645_04749008
CI01000010_04696294_04717129.mRNA mRNA upstream 236320 4696294 ~ 4717222 (+) True CI01000010_04696294_04717129
CI01000010_05012978_05018219.mRNA mRNA downstream 57616 5011379 ~ 5018346 (+) False CI01000010_05012978_05018219
CI01000010_05047527_05065421.mRNA mRNA downstream 93764 5047527 ~ 5066870 (+) True CI01000010_05047527_05065421
CI01000010_05185530_05200227.mRNA mRNA downstream 231358 5185121 ~ 5200514 (+) True CI01000010_05185530_05200227
CI01000010_05238328_05242974.mRNA mRNA downstream 283266 5237029 ~ 5243396 (+) True CI01000010_05238328_05242974
CI01000010_05308426_05318353.mRNA mRNA downstream 354529 5308292 ~ 5319096 (+) True CI01000010_05308426_05318353
TU71841 other upstream 299549 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other upstream 301775 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU71738 other upstream 504215 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 1013597 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 1059749 3890095 ~ 3893793 (+) True G62838
TU72215 other downstream 741682 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 743660 5697423 ~ 5699465 (+) False G63403
TU72216 other downstream 750318 5704081 ~ 5707085 (+) True G63403
TU72219 other downstream 754208 5707971 ~ 5717250 (+) False G63405
TU72237 other downstream 803190 5756953 ~ 5757934 (+) True G63420

Expression Profile