RNA id: TU71900


Basic Information

Item Value
RNA id TU71900
length 138
lncRNA type read_through
GC content 0.45
exon number 1
gene id G63116
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4998938 ~ 4999075 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCTCACTTTGCCTTCCCTCCTACACTACTGGCTGATGGGTTCCTATTGGCAGGCTGCCACTATAAGGCGCTACAGGGGGAGAGACACTGCGATATGGGCACGCACTATAGAGGCACGGCCCAGCGTTTCCAACACCCCCGCAAACTCTCGCGCGTCCTAGACGCTCTCCCGTGCAGTCATCCACGCTCAGACACGCGGAGGGTGATGCCATTAACCAAAAGAGGAGGACGTAATGCAGGAAATTTGTTCGTACATCAGAACAACATTCTACTGGGGTCGTTGCATAATTCAAACTCCCAGCCGCAGCGGGGTTTGAGAAGGGCCGTGCCGCCGCCGCCGCCCCCTTAGGGACGGAGCAGAGGAGGATGGATGGCATTAGAGGTGGAGGAATGTAAGACTGCTCATGAACGTGACTTTGTTTTTTCGTTCTCCAGCATTCACACCGGTCTTAACAAGAGCCGAGCTCTCCATTCAGGAAGTTTACCTCTCAAAATAGACTATATCTTAGAAAATATATAACAGGTGTCATCTATCAAATATTATCTGCTATAGCTATTTTTGTTCAACCAGTACAATCAGAGTCAATGCTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTATGAAGGTCATATTAACACTGTTTTGGAAACTTTACTGTGCCTTCATAATTTATTTTTGGTATTTTTCAAATGCCCTTTTGTGTACAGATTTTATTGTTTTACCCTTGTCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71941 lncRNA upstream 1480 4953542 ~ 4953763 (+) True G63151
TU71938 lncRNA upstream 8575 4946465 ~ 4946668 (+) True G63149
TU71920 lncRNA upstream 53601 4901433 ~ 4901642 (+) True G63134
TU71917 lncRNA upstream 75722 4879024 ~ 4879521 (+) True G63131
TU71876 lncRNA upstream 181544 4772221 ~ 4773699 (+) True G63096
TU71982 lncRNA downstream 16027 5015102 ~ 5018123 (+) True CI01000010_05012978_05018219
TU72160 lncRNA downstream 571096 5570171 ~ 5579186 (+) True G63359
TU72129 lncRNA downstream 592301 5591376 ~ 5591852 (+) True G63328
TU72133 lncRNA downstream 635112 5634187 ~ 5638232 (+) True G63332
TU72186 lncRNA downstream 643802 5642877 ~ 5643077 (+) True G63384
CI01000010_04871254_04873119.mRNA mRNA upstream 81325 4870540 ~ 4873918 (+) True CI01000010_04871254_04873119
CI01000010_04803003_04849985.mRNA mRNA upstream 105258 4803003 ~ 4849985 (+) True CI01000010_04803003_04849985
CI01000010_04753467_04770912.mRNA mRNA upstream 183569 4753231 ~ 4771674 (+) True CI01000010_04753467_04770912
CI01000010_04735645_04749008.mRNA mRNA upstream 206019 4735645 ~ 4749224 (+) True CI01000010_04735645_04749008
CI01000010_04696294_04717129.mRNA mRNA upstream 238021 4696294 ~ 4717222 (+) True CI01000010_04696294_04717129
CI01000010_05012978_05018219.mRNA mRNA downstream 12304 5011379 ~ 5018346 (+) False CI01000010_05012978_05018219
CI01000010_05047527_05065421.mRNA mRNA downstream 48452 5047527 ~ 5066870 (+) True CI01000010_05047527_05065421
CI01000010_05185530_05200227.mRNA mRNA downstream 186046 5185121 ~ 5200514 (+) True CI01000010_05185530_05200227
CI01000010_05238328_05242974.mRNA mRNA downstream 237954 5237029 ~ 5243396 (+) True CI01000010_05238328_05242974
CI01000010_05308426_05318353.mRNA mRNA downstream 309217 5308292 ~ 5319096 (+) True CI01000010_05308426_05318353
TU71841 other upstream 301250 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other upstream 303476 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU71738 other upstream 505916 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 1015298 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 1061450 3890095 ~ 3893793 (+) True G62838
TU72215 other downstream 696370 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 698348 5697423 ~ 5699465 (+) False G63403
TU72216 other downstream 705006 5704081 ~ 5707085 (+) True G63403
TU72219 other downstream 708896 5707971 ~ 5717250 (+) False G63405
TU72237 other downstream 757878 5756953 ~ 5757934 (+) True G63420

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU66910 False 568 lncRNA 0.35 2 NC_035902.1 3319459 ~ 3320895 (-)