CI01000010_04609294_04611679 (NDUFAF2)


Basic Information

Item Value
gene id CI01000010_04609294_04611679
gene name NDUFAF2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4609189 ~ 4611710 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_04609294_04611679.mRNA
GCATTAATGCTATGTAATTATTGTGTAAAGCTACAACGCACAGTGAATGCGTATGCATGTGCAGTAAGAGAGAATATATTGACATTTCACAAAAAACTTATAGTGATGAGCCGTATAACCTCTTTCTTGCGAAGAACATTTGGAGTAGTAAAAGAACATATCGGCACAGATCATTTAGGAAATAAATATTACTTCATACCCGAGCAGAAGTCATGGACGGGACAGGTCATTCGGTCAAGGCGCCTAGTAGAAGCAGCAAATCCAAAAGAGTTTGAGTACATGGAAGGAAGCATTCCTTCTGAATGGGACGCTTGGATCAGAGGCAGGCGAAAACAGCCACCTACTATAGAGGAGTTGCTAAAGAATGAACGCTACAGGGAGCAGATCAAAATCAAAGCTGGAGAGGCAGGGGAAAGGGATAAAGCTCTGCAGGCCAAAGAGTATGAGGAAGGTCTGGTGGCCCAGCCTGTTCAGACTCAAGTCAAAGGTCATGCTTCTGCCACACAGTTTGGGCAGTCTGAATTCAGTGAGGACCCCGTAAGCACTGCCAACACATTCCAGCCAGGGTCCTGGACACCTCCAGGAAACAAAAAATAGGACTACATAAATCCTCCTTTGCCATCTTCAA

Function

symbol description
ndufaf2 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 10. Orthologous to human NDUFAF2 (NADH:ubiquinone oxidoreductase complex assembly factor 2).

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K18160 NDUFAF2; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_04609294_04611679.mRNA True 628 mRNA 0.45 4 4609189 4611710

Neighbor

gene id symbol gene type direction distance location
CI01000010_04534309_04549864 NA coding upstream 59230 4534178 ~ 4549959 (+)
CI01000010_04437892_04443935 RAB3C coding upstream 164743 4437429 ~ 4444446 (+)
CI01000010_04377762_04378990 MRPS36 coding upstream 230107 4377147 ~ 4379082 (+)
CI01000010_04368541_04374080 NA coding upstream 235015 4368471 ~ 4374174 (+)
CI01000010_04165584_04232583 SKIA, SKI coding upstream 376606 4165584 ~ 4232583 (+)
CI01000010_04614357_04631136 NA coding downstream 2519 4614229 ~ 4631460 (+)
CI01000010_04640858_04683752 OSBPL9 coding downstream 28806 4640516 ~ 4683778 (+)
CI01000010_04686730_04692395 CALR coding downstream 74950 4686660 ~ 4692633 (+)
CI01000010_04696294_04717129 EPS15 coding downstream 84584 4696294 ~ 4717222 (+)
CI01000010_04735645_04749008 TTC39A coding downstream 123935 4735645 ~ 4749224 (+)
G63058 NA non-coding upstream 18050 4590169 ~ 4591139 (+)
G63078 NA non-coding upstream 36695 4572277 ~ 4572494 (+)
G63070 NA non-coding upstream 51890 4556992 ~ 4557299 (+)
G63069 NA non-coding upstream 54208 4554752 ~ 4554981 (+)
G63056 NA non-coding upstream 56786 4552199 ~ 4552403 (+)
G63096 NA non-coding downstream 160511 4772221 ~ 4773699 (+)
G63131 NA non-coding downstream 267314 4879024 ~ 4879521 (+)
G63134 NA non-coding downstream 289723 4901433 ~ 4901642 (+)
G63149 NA non-coding downstream 334755 4946465 ~ 4946668 (+)
G63151 NA non-coding downstream 341832 4953542 ~ 4953763 (+)
G62983 NA other upstream 159862 4448172 ~ 4449327 (+)
G62856 NA other upstream 669244 3937757 ~ 3939945 (+)
G62838 NA other upstream 715396 3890095 ~ 3893793 (+)
CI01000010_03320340_03346243 NA other upstream 1278003 3313695 ~ 3347796 (+)
CI01000010_03197380_03199958 NA other upstream 1409281 3197380 ~ 3200044 (+)
G63403 NA other downstream 1083735 5695445 ~ 5707085 (+)
G63405 NA other downstream 1096261 5707971 ~ 5717250 (+)
CI01000010_05789479_05790006 NA other downstream 1145243 5788332 ~ 5790204 (+)
G63524 NA other downstream 1762848 6374558 ~ 6374667 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036327 ndufaf2 coding NC_007119.7 CM002892.2 16732834 ~ 16738204 (-)