RNA id: TU71811


Basic Information

Item Value
RNA id TU71811
length 200
lncRNA type intronic
GC content 0.38
exon number 1
gene id G63053
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4544659 ~ 4544858 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGACATTGACATCTCTGGTGCACACGCATTAAAAATGCAAAATGGCACACCTGCCAAGGGACATGCAGCTGTAATTGCAAAAACATTTGCCGTCTTAAAATAGGACGACTTTACAAAATATGGTGCCAATACAGCTGAAAATATTTTCCTATTTTCCTGTTTTCACACATCTTGAGCAAATTGTCAAAGCTGATTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71810 lncRNA upstream 207 4544222 ~ 4544452 (+) True G63052
TU71735 lncRNA upstream 62525 4394980 ~ 4482134 (+) True G62980
TU71764 lncRNA upstream 64084 4475671 ~ 4480575 (+) True G63006
TU71737 lncRNA upstream 97473 4445516 ~ 4447186 (+) True G62982
TU71697 lncRNA upstream 214661 4329758 ~ 4329998 (+) True G62948
TU71814 lncRNA downstream 7341 4552199 ~ 4552403 (+) True G63056
TU71848 lncRNA downstream 9894 4554752 ~ 4554981 (+) True G63069
TU71849 lncRNA downstream 12134 4556992 ~ 4557299 (+) True G63070
TU71857 lncRNA downstream 27419 4572277 ~ 4572494 (+) True G63078
TU71816 lncRNA downstream 45311 4590169 ~ 4591139 (+) True G63058
CI01000010_04437892_04443935.mRNA mRNA upstream 100213 4437429 ~ 4444446 (+) True CI01000010_04437892_04443935
CI01000010_04377762_04378990.mRNA mRNA upstream 165577 4377147 ~ 4379082 (+) True CI01000010_04377762_04378990
CI01000010_04368541_04374080.mRNA mRNA upstream 170485 4368471 ~ 4374174 (+) True CI01000010_04368541_04374080
CI01000010_04165584_04232583.mRNA mRNA upstream 312076 4165584 ~ 4232583 (+) True CI01000010_04165584_04232583
CI01000010_04046204_04137642.mRNA mRNA upstream 407017 4046204 ~ 4137642 (+) True CI01000010_04046204_04137642
CI01000010_04609294_04611679.mRNA mRNA downstream 64331 4609189 ~ 4611710 (+) True CI01000010_04609294_04611679
CI01000010_04614357_04631136.mRNA mRNA downstream 69371 4614229 ~ 4631460 (+) True CI01000010_04614357_04631136
CI01000010_04640858_04683752.mRNA mRNA downstream 95658 4640516 ~ 4683778 (+) False CI01000010_04640858_04683752
CI01000010_04686730_04692395.mRNA mRNA downstream 141802 4686660 ~ 4692633 (+) True CI01000010_04686730_04692395
CI01000010_04696294_04717129.mRNA mRNA downstream 151436 4696294 ~ 4717222 (+) True CI01000010_04696294_04717129
TU71738 other upstream 95332 4448172 ~ 4449327 (+) True G62983
TU71580 other upstream 604714 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 650866 3890095 ~ 3893793 (+) True G62838
TU70047 other upstream 1213473 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 1344751 3194155 ~ 3199031 (+) True G61462
TU71841 other downstream 95983 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 95983 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU72215 other downstream 1150587 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 1152565 5697423 ~ 5699465 (+) False G63403
TU72216 other downstream 1159223 5704081 ~ 5707085 (+) True G63403

Expression Profile