CI01000010_05523602_05535371 (BCAR3)


Basic Information

Item Value
gene id CI01000010_05523602_05535371
gene name BCAR3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5523516 ~ 5535692 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_05523602_05535371.mRNA
GAATAAAAAAGAGAGAAGACTAATAAAAGACTGACACCATATACTTCAATCACAGAGACAAACATACCATCTACTGTAGGGCCACCATGGCTCTAACATACTCTTCTGTTCCCATCTATGTGCAGTTTTCAAGGGACAAGTACATCATGGATGGACCACCAGAGAAGCTTCGGAGAGAACTAGAGGAAGAACTGAAACTAAGCAGTGAGGAACCACGGAGCCATGCCTGGTATCATGGAGCTATCCCTAGACAGGTGGCTGAAAACCTGGTCCAGCGTGATGGAGACTTTTTGATCCGAGACTCGCTGTCCAGCCCGGGAAACTATGTCCTCACCTGCCAGTGGAAGAACACTCCTCAACACTTCAAAATCAACAAACGAGTAGTAGCCATGAATGAGGCCTACTCACGCGTTCAGTACCTGTTTGAGAAGGAGGGATTTGACAGTGTCCCCGCTTTGGTGCGATACTATGTGGGCAACCGGGAGCCGGTATCTGAGGTTGTCGGAGCGATTATCTTTCAGCCAATCAACAGAGCTCTGCCTCTGAGATGCCTGGAGGAGAAATATGGAGTTGGATCTATACGTGTAGAGGCGGGATACTCCGAGAGAAAGAGCCTGACTTCCAAACGGTTGAGTCTGAATATCATGAACGGACACACCCAGGATCACACCCTCAGCCGTGGGAACCTCCTCAGCCACAAAGATAAATGTGGGAGTCAACCAGCATGTCTGAACCACGTTCAGGAGAGGAGACGGCCACTGAAGACCCATCAGTCGGAGAGCTTCCTCCCTATCGGCTGTAGGCCCCAGGCCCAGGTTCAGCATATGGAGCACCAGCCGTGCCCCAAATCCCCAGTTTTCCGAACAGGAAGTGAGCCAGCTCTGAGCCCCACAGTGCCACGCAGAATGGCTTTCGACACCCAGCCTGGTGAGGCCATTCGTGGATCTGACAGCCAGCTGTATCCCAAACCGCCCCCTAAACCCAGCAAGGTTCCCACTATAAGAGTATCCTGCACCCCGGGCCTGAAGACCCTCGCCCCACCTGTCCCCCCGGTAAAGCCCCACAAACAGCGACCTTCATCTCAGCAACAGCAGCAGTCGGAAGTAAGCTACTGTGAACTGAGTCCATGCAGCCCTGCTGATTGGGAAAAGATGAATAGCTTACATGCTAACAGCTATGTGGAGAGGCTAAAGACTGAGGAGGAGTTAAGGAGAAGTGATAGCAGCATTAAACTAGATCGTAGCTCCTACCATAACGCCATTGAGGCCCTAGAGCACGACAGTGAGGAAGACATCGAGGAGGATGTGGATAAAGAAGAGGATGGCAAGAAAGGTTTCCAAAGACCTGTGTTTGAAACTGAATCAGCATTCAAACCTGGTGACATCAACTTCCGGCTTCTACCAGTGGAGAACAAACCATTGGAGATGACAGTGCTGAAGAAAGCCAAAGAGCTGCTTGTCAGTCAGGATCCAAAGACCATCGCCAAACACATCCTGCAAGCAGACTGTCAGGTTGCCAGGATACTGAATGTTTCTGAGGTGCTGAAAGGTCAAATGGGCGTGACCTCTGGGCTGGAGCTGGTGACCCTTCCTCATGGGAGACAGCTGCGGCAGGACCTCATGGAAAGGCATAACACCATGGCAATTGGAGTTGCTGTGGATATCCTAGGGTGTACAGGAAGTCTGGAGGAGAGAGCAGCCACCCTAAACCGGATCATTCTGGTCGCTCTAGAGCTGAAAGACTCCATGGGAGATCTTTATGCCTTTTCCTCAATAATGAAAGCACTGGACATGCCTCAGATTACAAGATTGGATCATACATGGACTAGCCTTCGGAGGAAATATACACAGACTGCCATTATTTATGAGAAATCTTTGAAACCATTCTACAAAGGACTCTATGAAGGAAGTGCTGAAATCCCACTGAGCAACGCCAGTGTTCCGCTGCTGATGCCGCTGCTCACCTTGATGGAGAGACCTGCGGTCACCTTCGACGGGATGGACGTCTGGGAGAACAACGACCAAGGCTGCGAAATCATGTTTCGGCATCTGGAAGGAGCTCGTGCTGTTGCACGCAATGCAGACACCTACACCTGCAATGCACAGCGGATCCTCCAGGACTTCCAACCTAATGATGACATGTTGGAGATCTTGAGGACTGATTTCCAGTTGCGTCTGCTCTGGGGCAGCAGGGGGGCGGCCGTGGACCAGACCGAGCGATACGACAAATTCAAACTCATTCTCACAGCCCTGTCCAGAAAACTTGAGCCTCCAGTCAAACACACAGAACTCTGAAAAATGAGACATTTTATACAGTATACTAGACTCTCTGAGCAAGCAGAAACTGTCCAAACCTCTCTGGAGGCAGGTCAAAGGTCGTCTGTACCTATAAAAAGGATGTTCTCTAACAGAATGTGAGCTTCAGAAGATCATGTGCAGCTTGCAAGTTGGAAGCCATTCATGAGCACAAATGGCACTTGTCTGTGGAGAGCTACTTTCTTCCATATGCACCTTCCAGAGGCTGGTGAAATGGGCAGGTACCAGTTTTGCCTTCAAGAAAAGAAGGAATGGTACGTAGAATATAGCTACTGGCCAATACATCATCCACCCTAAGAA

Function

symbol description
bcar3 Predicted to enable guanyl-nucleotide exchange factor activity and phosphotyrosine residue binding activity. Predicted to be involved in positive regulation of peptidyl-serine phosphorylation. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human BCAR3 (BCAR3 adaptor protein, NSP family member).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_05523602_05535371.mRNA True 2615 mRNA 0.50 9 5523516 5535692

Neighbor

gene id symbol gene type direction distance location
CI01000010_05494740_05504597 NA coding upstream 18255 5493967 ~ 5505261 (+)
CI01000010_05477048_05482911 NA coding upstream 40215 5476525 ~ 5483301 (+)
CI01000010_05414058_05426498 NA coding upstream 96829 5414058 ~ 5426687 (+)
CI01000010_05359191_05385419 NA coding upstream 137832 5359191 ~ 5385684 (+)
CI01000010_05308426_05318353 BEND5 coding upstream 204420 5308292 ~ 5319096 (+)
CI01000010_05789479_05790006 NA coding downstream 252640 5788332 ~ 5790204 (+)
CI01000010_05819188_05855120 CEP350 coding downstream 283496 5819188 ~ 5855163 (+)
CI01000010_05859214_05887437 NA coding downstream 323522 5859214 ~ 5888267 (+)
CI01000010_05902969_05911426 LHX4 coding downstream 367277 5902969 ~ 5912165 (+)
CI01000010_06014142_06037829 XPR1A coding downstream 478450 6014142 ~ 6038450 (+)
CI01000010_05012978_05018219 NA non-coding upstream 505393 5011379 ~ 5018346 (+)
CI01000010_04934550_04955403 NA non-coding upstream 524441 4933856 ~ 4956630 (+)
G63162 NA non-coding upstream 531026 4983616 ~ 4992490 (+)
G63151 NA non-coding upstream 569753 4953542 ~ 4953763 (+)
G63149 NA non-coding upstream 576848 4946465 ~ 4946668 (+)
G63359 NA non-coding downstream 34479 5570171 ~ 5579186 (+)
G63328 NA non-coding downstream 55684 5591376 ~ 5591852 (+)
G63332 NA non-coding downstream 98495 5634187 ~ 5638232 (+)
G63384 NA non-coding downstream 107185 5642877 ~ 5643077 (+)
G63386 NA non-coding downstream 108964 5644656 ~ 5645797 (+)
CI01000010_04640858_04683752 OSBPL9 other upstream 869523 4640516 ~ 4683778 (+)
G62983 NA other upstream 1074189 4448172 ~ 4449327 (+)
G62856 NA other upstream 1583571 3937757 ~ 3939945 (+)
G62838 NA other upstream 1629723 3890095 ~ 3893793 (+)
CI01000010_03320340_03346243 NA other upstream 2192330 3313695 ~ 3347796 (+)
G63403 NA other downstream 159753 5695445 ~ 5707085 (+)
G63405 NA other downstream 172279 5707971 ~ 5717250 (+)
G63524 NA other downstream 838866 6374558 ~ 6374667 (+)
G63572 NA other downstream 1050236 6585928 ~ 6617806 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location