RNA id: TU72134


Basic Information

Item Value
RNA id TU72134
length 535
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G63333
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6088239 ~ 6089177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACACTGGAAGGAAGTTAACTGACACATAAATGCTTAAGGAGTAAGGGTGAAGATGGGTAATTATCTAGCATGTACCAGAGATGTCTTACCTCATCTCTCCAGCCTATCAGACAGGTGAATGATGCCTCTCTCCTCAGCTCCTGCAAGACCTCATCCACAGCCACTGATCTGCTCTCAAAAGTGTCAACACTGGAGCAAAAGGTTATAGCGCTCCCATATGGTCTGAAGACAGAAGGAAAACGACCAAGAATTGATGCTACTTTTGGGGGAATCCATCCAACCTGTTCTCCAGCCACCTCAAAACGTAGACAGCTCTCTAAACTAGAACCTGGTAAATGAAAGTTATTCATTCGACGTAGGAGTTGAAGCATTTTCTCAGACCACGAAGCCATTTTGTCGATTTCACACGGGTAACAGTTAATTGTCCGTTCAGAAACCGTGCATTATGAAATTAGGGGATTTGTGCTTGATTTGTCGTTGACATGCTGTCACACACCCACGGGCTTCATGCTCGCCTCCATTGTTACAGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72262 lncRNA upstream 204588 5882768 ~ 5883651 (+) True G63443
TU72261 lncRNA upstream 206639 5881195 ~ 5881600 (+) True G63442
TU72220 lncRNA upstream 370989 5715716 ~ 5717250 (+) True G63405
TU72217 lncRNA upstream 389774 5695445 ~ 5698465 (+) False G63403
TU72210 lncRNA upstream 394231 5691435 ~ 5694008 (+) True G63399
TU72128 lncRNA downstream 10241 6099418 ~ 6101358 (+) True CI01000010_06093805_06101291
TU72119 lncRNA downstream 13680 6105372 ~ 6105686 (+) True G63318
TU72316 lncRNA downstream 70455 6159632 ~ 6159848 (+) True G63497
TU72321 lncRNA downstream 93168 6182345 ~ 6182679 (+) True G63502
TU72322 lncRNA downstream 93662 6182839 ~ 6183069 (+) True G63503
CI01000010_06080203_06081963.mRNA mRNA upstream 5960 6080203 ~ 6082279 (+) True CI01000010_06080203_06081963
CI01000010_06074779_06076207.mRNA mRNA upstream 11959 6074427 ~ 6076280 (+) True CI01000010_06074779_06076207
CI01000010_06062478_06073546.mRNA mRNA upstream 14447 6062478 ~ 6073792 (+) True CI01000010_06062478_06073546
CI01000010_06043120_06058750.mRNA mRNA upstream 29416 6043120 ~ 6058823 (+) True CI01000010_06043120_06058750
CI01000010_06014142_06037829.mRNA mRNA upstream 49789 6014142 ~ 6038450 (+) True CI01000010_06014142_06037829
CI01000010_06093805_06101291.mRNA mRNA downstream 4628 6093805 ~ 6101291 (+) False CI01000010_06093805_06101291
CI01000010_06102935_06103344.mRNA mRNA downstream 13758 6102935 ~ 6103603 (+) False CI01000010_06102935_06103344
CI01000010_06116623_06143372.mRNA mRNA downstream 27347 6116524 ~ 6144062 (+) True CI01000010_06116623_06143372
CI01000010_06146390_06152584.mRNA mRNA downstream 57132 6146309 ~ 6152735 (+) True CI01000010_06146390_06152584
CI01000010_06154873_06157770.mRNA mRNA downstream 65696 6154873 ~ 6158518 (+) True CI01000010_06154873_06157770
TU72237 other upstream 298252 5756953 ~ 5757934 (+) True G63420
TU72219 other upstream 370989 5707971 ~ 5717250 (+) False G63405
TU72215 other upstream 381154 5695445 ~ 5707085 (+) False G63403
TU72351 other downstream 285381 6374558 ~ 6374667 (+) False G63524
TU72352 other downstream 285381 6374558 ~ 6374667 (+) True G63524
TU72350 other downstream 296665 6424211 ~ 6424688 (+) True CI01000010_06399511_06426913
TU72416 other downstream 496751 6585928 ~ 6617806 (+) True G63572
TU74882 other downstream 2943370 9032547 ~ 9038005 (+) False G65803

Expression Profile