CI01000010_06062478_06073546 (DEF6, DEF6A)


Basic Information

Item Value
gene id CI01000010_06062478_06073546
gene name DEF6, DEF6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6062478 ~ 6073792 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_06062478_06073546.mRNA
GGGGTGTCATTTGCCAGTTGGAGGATGCACACTTGTGCGGTGGGTGTGGGTGGCCTAGAACGACAGAGCGAGAAAAAGAGAAGGCAGTGAAAAAAGGAAAAACGGAGAGTAAAATTGCTGCAGTCATGGACTTGCGCTCAGAACTGCTCAAGTCCATTTGGTACGCTTTCACCGCTCTAGATGTGGAGAAGAGTGGAAAGGTGTCCAAGTCACAACTAAAGGTCTTGTCTCATAATCTTTACACAGTTCTGGGTATCCCGCATGATCCGGCGGCTCTCGAGGAGCACTTCAGAGACGATGACGACGGTCCAGTGTCCAGCCAGGGATACATGCCCTACCTCAACAAATACATCCTGGACAAGGTGGTGGAAGGCACATTTGTTAAAGAAAATGTGGATGAGCTCTGCTGGACTCTTACTGCCAAGAAGAACTATAGACCTGAGGGAAAGAGCATTTTACCTGGAAAAGACGCCTTCCGGCTCTGGTGTCTGTTCATATTTCTCTCGGAGGACAGATATCCACTGGTCATAATCCCAGATGAGGTTGAATATTTACTCAAGAAATTATGCATGGCCATGAGCGTTGAGCTGAACCTTGTTGAACTCGAGGACTTCATTTCCCAGGATTCTGTTCAGCAGAACGGCTTCTCTGTATGGGCTTTTCTGGAGATGATGAATTCTGGGAAACTAACGAGGGGCATTGCCAAGGAAACCATCAGCATGGCAATAGAGGATGTGTACCGGGAAATAGTGGGTGATGTGCTGAAAGAGGGATATCTGTGGAAGAAAGGTCAGTTGAGGAGAAACTGGACCGAACGTTGGTTCACCCTGAAACCCAGCACTTTAATATACTTCACCAGCGAGGACCGCAAAGATCGCAAGGGCAACATTCAGCTAGATGGAAACTGCTGTGTAGAGGTTCTTCCTGACAGAGATGGGAAGAGGTGCATGTTCTGTCTGAAGACGCTCACCAAGACCTATGAACTCAGTGCATCTGACACCAAACAGAGGCAGGAGTGGACTACAGCTATCCAGACAGCTATCCGGCTGCACGTGGAGGGTAAAAATTCTCTTCATAAGGACCTAAAGCTGAAACGGCGTGAGCAGCGGGAACAGAGGGAGAAGAGACGGGAGGCGAAGGAGCAGGAGCTGCAGCGCTTGCGGGCCCTGCAGGAGGAGCGGGAGAGGAAGATGGCAGAGCTGGAGCTGCTAAAGGAGGCGCAGAGGCAGGCGCAAGCACTGCTGGAGCAGGACGAACTCCGCAGACGGCAACAGCACGAACAACTCCAGCAGGCCCTGGAGATCCAGCTCAAAGAGGCTGAAGAGGCGCGGGCGAGCATGCAGGCAGAGATGGCGCTGAAGGAGGCCGAGGCTGAGAGACAGAGAACACGAATCCGAGAACTGGAGGCCATGCAGCAGCGGCTAGAGGAGGCTTTACAACAGGAAATCAAAGCCAGACAAGACGAAGAGGCCTTCCGCTACGCTCAGGCTCGGCTACTGGCTGAGGAAGAGGAGAAGATGAAGGCCCTCATGTCTCTCCGTGAGGAGCAGGAGGAGTATATCCAGCGAGCCCAGCGGGAGAAACAAGAGCTCAGACAGGAAATGGAAAGTAAGACTCGAGCTCTGGATGATGCACAGAAGCAGCTGGAGGAGGTCAGGGCCAATCGCTACCGAGTGGACCAGGATGTAGTGGCTGCTCAAAGGAAGCTTCGTCAGGCCAGCACAAATGTTAAACACTGGAACGTTCAGATGAACAGATTAATGCATCCTATTGGACCAGGAGAAAAACGGTCCTCAGGAGGGTCTTTTTCCAGCTTTCGCATCCCTTCACAGAAAGATCCAGGACTACGTCTGAGGCAGAAATCGGATGAGCAGGATGAGGAAAGCAAAGAAAACGTGGAAAGCAGAGGAGGGTGTGGATCTGACAAGCGTTTGTCTACAAATGGAGACATGGAAATACCTTAACCTCAGAAGAAGAAAAAAAAGAAAAAAAAATCTCTTTCTCAATGTTAAGACTGATTTGAGTGAAAGGTGCCAAGACCTCATGCTGTTAAAAGCGCTATGCTTTTTATTTTGTCATTATTTGTTAATAGCTTGTTAAACAGTAAGTTTTTGTACACTTTGTCACACCGTTTGAAAAGTATTGTACTGTAGTTGTTAAATAATTGTCTGATTGACTCAAAACATTATGCAGACTAAGATATACACTGA

Function

symbol description
def6a Acts upstream of or within cell migration involved in gastrulation and convergent extension involved in gastrulation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including female organism; fin; lateral line; post-vent region; and somite border. Orthologous to human DEF6 (DEF6 guanine nucleotide exchange factor).
def6 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Located in cytosol and nucleoplasm.

NR:

description
differentially expressed in FDCP 6-like protein

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_06062478_06073546.mRNA True 2210 mRNA 0.49 11 6062478 6073792

Neighbor

gene id symbol gene type direction distance location
CI01000010_06043120_06058750 SIN3B coding upstream 3655 6043120 ~ 6058823 (+)
CI01000010_06014142_06037829 XPR1A coding upstream 24028 6014142 ~ 6038450 (+)
CI01000010_05902969_05911426 LHX4 coding upstream 150313 5902969 ~ 5912165 (+)
CI01000010_05859214_05887437 NA coding upstream 174211 5859214 ~ 5888267 (+)
CI01000010_05819188_05855120 CEP350 coding upstream 207315 5819188 ~ 5855163 (+)
CI01000010_06074779_06076207 NDUFB11 coding downstream 635 6074427 ~ 6076280 (+)
CI01000010_06080203_06081963 RHOA.S, RHOCB, RHOC, RHOA, RHOAC, RHOAA coding downstream 6411 6080203 ~ 6082279 (+)
CI01000010_06093805_06101291 NA coding downstream 20013 6093805 ~ 6101358 (+)
CI01000010_06102935_06103344 DEDD coding downstream 29143 6102857 ~ 6103603 (+)
CI01000010_06116623_06143372 ATP2B3B, ATP2B3, ATP2B3A coding downstream 42732 6116524 ~ 6144062 (+)
G63443 NA non-coding upstream 178827 5882768 ~ 5883651 (+)
G63442 NA non-coding upstream 180878 5881195 ~ 5881600 (+)
G63405 NA non-coding upstream 345228 5707971 ~ 5717250 (+)
G63403 NA non-coding upstream 364013 5695445 ~ 5707085 (+)
G63399 NA non-coding upstream 368470 5691435 ~ 5694008 (+)
G63333 NA non-coding downstream 14447 6088239 ~ 6089177 (+)
G63497 NA non-coding downstream 85840 6159632 ~ 6159848 (+)
G63502 NA non-coding downstream 108553 6182345 ~ 6182679 (+)
CI01000010_05789479_05790006 NA other upstream 272491 5788332 ~ 5790204 (+)
CI01000010_04640858_04683752 OSBPL9 other upstream 1408485 4640516 ~ 4683778 (+)
G62983 NA other upstream 1613151 4448172 ~ 4449327 (+)
G63524 NA other downstream 300766 6374558 ~ 6374667 (+)
G63572 NA other downstream 512136 6585928 ~ 6617806 (+)
G65803 NA other downstream 2958755 9032547 ~ 9038005 (+)
G65875 NA other downstream 3053518 9127310 ~ 9132112 (+)
G66014 NA other downstream 3444792 9518584 ~ 9519262 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036291 def6a coding NC_007119.7 CM002892.2 14185295 ~ 14209852 (-)