CI01000010_06043120_06058750 (SIN3B)


Basic Information

Item Value
gene id CI01000010_06043120_06058750
gene name SIN3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6043120 ~ 6058823 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_06043120_06058750.mRNA
ATGGCGAAAATTCAGGCTCACAGCAGCACTGCGAAGCAAATCAACCAGATCCAAGACAAGGCCTATGTGGTTCAGAAGCAAGTCCAGCAGCAGCACTTTCAGAAACTAAAGGTGGAGGATGCCTTATCTTACTTGGACCAAGTCAAAATACGGTTTGGAAATGATCCAGGAATATACAATAAGTTTCTGGATATCATGAAAGAGTTTAAATCTCAAAGCATTGACACACCAGGCGTTATCAACAGAGTTTCTCAGCTCTTCCATGGGCATCCTGACCTTGTCCTGGGGTTTAATGCCTTTTTACCGCCTGGGTATCGGATCGAAATTCCTAAGAATGGAATGGCATTTCTTCAGTCCCCGTTTCCCTCACAGGTCTCTCCAGGACCAGGAAGGAGCACGGGCAGCCCTGTGGTTAGTGCCTCTTCGTCAGTATTGGCTGAGGCAGGGTCGGCTCAGAATGAAGCCGTGACCTCTCCTGAGAGCATCGCTTCATCGTCTGGACCTCCTGAACAATCAAGCAGGTTGTCACTTCCTCTGCCCAACAGAGAGAGCCAATCACAGCCGGCCACCACGTCAGTGTCCCCTCCCACATCAGAGCCCAGTCCTGTGGAGTTTGACAGCGCCATCAGTTACGTCAATAAGATCAAAAATCGATTTTTGGACAACCCAGAAACCTATCGGTCCTTTCTGGAAATTCTGCATACATACCAGAAGGAGCAGCTGGAGGTGAAGGAGAGCAGAGGCCGTAGCACTGGAGGAATGACCGAAGATGAGGTTTTCTCTAAAGTGGCGAGCCTTTTCAAAGGTCAAGAGGATCTGCTTGCAGAGTTTGGCCAGTTTTTGCCTGATGCAAAGAGATCTCTGTTCACTGGAGGTTCTTTGACTGGCAAAGACCATTTGAAGAAAGCAGATGAAGAGGAAATGAATAAACAGACCAAGAAGAGACCTAGACCCATGCTGTTGCCCCACATGACGCCACTTCTGAAGAAAAAAATGAAATATTCCTGTTCCAAGGACCCGTCTTTTGCTTCTGTAGGAAAACACGGAGTCCTGCGGGAATTCACATTCTTTGATAAGGTTCGTCGTCTCCTCAAGAGTCAGGAGGTGTATGAGAATTTCTTACGCTGCATAGCCCTGTTCAATCAAGAAGTGGTTTCAGGGGCTGAACTCCTGCAGCTTGTAACTCCATTCTTGGGGAAGTTTCCAGAACTGTACACCCAGTTTAAGTCATTTTTGGGTGATAAAGAGCTGTCTCATGCCATCTCGGGCCTCTCTGACCGCTACATGGAGGGTGGAGGCAGAGAAGTGGATTACGCCTCCTGTAAACGCCTGGGTTCCAGTTACAGAGCCCTTCCCAAGACCTACCAGCAGCCCAAATGCAGTGGTCGAACTGCTATATGCAAAGAGGTGCTGAATGATACCTGGGTCTCATTCCCTTCCTGGTCTGAAGACTCCACTTTTGTGAGTTCCAAGAAAACACCATATGAAGAGCAACTTCATCGCTGTGAGGATGAGAGATTTGAGAAGAAGCTATCGCGCCTTTCGCCGGAGGATCAAGAGCGTTTCCGATTGGACGACTGCCTGGGTGGAACTTCTGAGGTCATACAGCGGCGTGCAGTCTATCGTATCTACGGCGACAAGGCTCCAGAGATCATAGAAGGGTTGAAGAGGAGTCCAGCCACTGCAGTTCCTGTTGTACTTAAAAGATTGAAAGCTAAAGAGGAGGAGTGGAGGGAGGCTCAGCAGGGTTTCAACAAAATCTGGAGAGAGCAATACGAGAAGGCGTATCTGAAATCACTGGACCACCAGGGTGTCAACTTCAAACAGAACGACATGAAGGCCCTCCGATCCAAGAGTCTTCTCAATGAAATAGAGAGCATCTATGATGAGCGGCAGGAGCAGAGCACAGAGGAGGGCGGTGTGGGCCAGCAAGGTCGTGACGGCTCGGGCACAGGTTCGACCAGTGAGCCCCACATGATCTTCACTTACGAAGACAAACAGATCCTGGAAGACGCTGCCTCCCTCATCATCTACCACGTCAAGCGGCAGCCCACCATCCACAAGGATGACAAGGATCACATCAAGCGCATCATCCAGCACTTCGTCCCCGATCTCTTTTTTGCCCGTCGTGGAGAGCTTAGCGAGACGGAAGAGTTTACAGACGAGGAGGCAGAGGGTGAGGACGGCTCCGCCGCAGGAGGTGGAGTCTCAACGACAGGCGGCCAACAACAGTTGAATGGCGATTCCAGAAGAAGACGATGCACTTCCCCTCAGAGCATGGACACCTCTACGGCCTCCCACAGCATGAATCCAGAAGGGGAGGCTGTAGATCTGCGAGACCCAGAAGCTGAGCACCAGAAGGAGCTGGATGGAGTCTACAACCTGTTCTTCGTCAATAATAACTGGTACTTCTTCCTGAGGCTGCACCAGACTCTCTGCTCGCGGCTGCTGAGGGTTTACAGGCAGGCTGAGAGACAGTTACTGGAACACAGGGCGGAGCAGAATCGGGAACGGCTGCTCATGGGAGAGGGGCGCAGAGAAAAGGCAAATGACCTGGCCATGGAGCTGCGTCTAAAACAGCCAAGTGAGGTGGAGTTAGAGGAATATTACCCAGCATTCTTAGACATGGTACGCAGTCTACTGGATGGAAACCTGGAGTCCACGCAGTATGAGGACACCCTGAGGGAGATGTTCACCATCCACGCTTACATCGGCTTCACCATCGACAAGCTTATTCAGAACATCGTAAGACAGCTTCAACACCTGGTCAGTGATGAGGTATGTCTGCAAGTCACTGAGCTGTACCTGGCTGAGAGGAAGAGGGGAGCCGCTGGTGGGAATCTCTCATCCCAGTGTGTCCGTGCCGCTTGGGAGGCCAGTTACCAATGGAAAGCAGAGAGAGTCATGGCTGAAGAGAACTGCTTCAAGGTCATGTTTATTCAAAACAAAGGTCAGGTAACCTTAACGATTGAGCTGCTGGACACGGAGGAGGCCCAGGGCGATGACCCGTTGGATGTTCAGAGCCTGTCTAATTACATGGAGCAGTATATAGGGACGGAGTCTGTGTGCTCTCAGGCAGAAGGCTACTACTTCAAGCCTGTGTTTCTACCCAGGAATCTGAGGCATTTCCGCGGCTGGCAGCTCAAGCAGGTGGAAGCCATGCGCTGCCGGAGAGAGTGGCATCGGAAGATGGGTGTGGAGACAGCCGGGAACCTGGACTGCCGTTTCAAACTCAACACGCACAAGATGGTGTTTGTGATGAACTCCGAAGACTACATGTACCGCCGAGGAGCCCTGGTGAAGGCTCGGAGGTCCCAGCACAGAGTAGCACGGGCCCAACATGAGCGCTTTGAGCAGTGGCACCGGGGCTGGTTGAGCGAGCACGTGTCCCCTGCCGCCGAGCGCAGCGTGCAGGACTGGCTCATGGGAGAAGAAGATGAGGACATGATCCCCTGCAAGACCACCTGCGTGTCCATGCAGGTCAAAGGCTTACATGTCAACAGGTACCAGGTGCACTACAACAGCAAGGCCCCCGCCTCACCGTAACAACCTCAAGCTTTGGGATGGATTTTTGTGATCTCTTTGTCTCTTTCTCACTCACTCATGCTCATGGCTGAGA

Function

symbol description
sin3b Predicted to enable transcription corepressor activity. Acts upstream of or within ossification involved in bone maturation and swimming behavior. Predicted to be located in nucleus. Predicted to be part of Sin3 complex. Predicted to be active in chromatin. Orthologous to human SIN3B (SIN3 transcription regulator family member B).

GO:

id name namespace
GO:0016575 histone deacetylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_06043120_06058750.mRNA True 3619 mRNA 0.52 19 6043120 6058823

Neighbor

gene id symbol gene type direction distance location
CI01000010_06014142_06037829 XPR1A coding upstream 4670 6014142 ~ 6038450 (+)
CI01000010_05902969_05911426 LHX4 coding upstream 130955 5902969 ~ 5912165 (+)
CI01000010_05859214_05887437 NA coding upstream 154853 5859214 ~ 5888267 (+)
CI01000010_05819188_05855120 CEP350 coding upstream 187957 5819188 ~ 5855163 (+)
CI01000010_05789479_05790006 NA coding upstream 252916 5788332 ~ 5790204 (+)
CI01000010_06062478_06073546 DEF6, DEF6A coding downstream 3655 6062478 ~ 6073792 (+)
CI01000010_06074779_06076207 NDUFB11 coding downstream 15604 6074427 ~ 6076280 (+)
CI01000010_06080203_06081963 RHOA.S, RHOCB, RHOC, RHOA, RHOAC, RHOAA coding downstream 21380 6080203 ~ 6082279 (+)
CI01000010_06093805_06101291 NA coding downstream 34982 6093805 ~ 6101358 (+)
CI01000010_06102935_06103344 DEDD coding downstream 44112 6102857 ~ 6103603 (+)
G63443 NA non-coding upstream 159469 5882768 ~ 5883651 (+)
G63442 NA non-coding upstream 161520 5881195 ~ 5881600 (+)
G63405 NA non-coding upstream 325870 5707971 ~ 5717250 (+)
G63403 NA non-coding upstream 344655 5695445 ~ 5707085 (+)
G63399 NA non-coding upstream 349112 5691435 ~ 5694008 (+)
G63333 NA non-coding downstream 29416 6088239 ~ 6089177 (+)
G63497 NA non-coding downstream 100809 6159632 ~ 6159848 (+)
G63502 NA non-coding downstream 123522 6182345 ~ 6182679 (+)
CI01000010_04640858_04683752 OSBPL9 other upstream 1389127 4640516 ~ 4683778 (+)
G62983 NA other upstream 1593793 4448172 ~ 4449327 (+)
G63524 NA other downstream 315735 6374558 ~ 6374667 (+)
G63572 NA other downstream 527105 6585928 ~ 6617806 (+)
G65803 NA other downstream 2973724 9032547 ~ 9038005 (+)
G65875 NA other downstream 3068487 9127310 ~ 9132112 (+)
G66014 NA other downstream 3459761 9518584 ~ 9519262 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036292 sin3b coding NC_007119.7 CM002892.2 14211746 ~ 14239023 (-)