RNA id: TU72321


Basic Information

Item Value
RNA id TU72321
length 335
lncRNA type intronic
GC content 0.37
exon number 1
gene id G63502
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6182345 ~ 6182679 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAGAGTAACCAATATAAAGGGACCATTTTGGATCAAGCCATGCGGTCAGTATCATGTGACAGGATGTGAAATCATTCAGACACCTGCAAAGGACCACATGGTCATGAAGCAAAGTAACTAACTCTCTCTTAACTATTTGAAAAATTCATGTTTTCACTTGCTCATACGCATGTCCTGAAACATCAGGTCATACAACCGCTATAAAACATGGAAAATGTTAAAAACTTGTACTAAATATAAATTGTTTAATTGTCCTTTCCTTAGCTAGCTAGCAAGCTAACTAGCTAGCTAGCTAGATATCAGCCTGTTAGCATTGTTTGAAAATTTCGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72316 lncRNA upstream 22497 6159632 ~ 6159848 (+) True G63497
TU72119 lncRNA upstream 76659 6105372 ~ 6105686 (+) True G63318
TU72128 lncRNA upstream 80987 6099418 ~ 6101358 (+) True CI01000010_06093805_06101291
TU72134 lncRNA upstream 93168 6088239 ~ 6089177 (+) True G63333
TU72262 lncRNA upstream 298694 5882768 ~ 5883651 (+) True G63443
TU72322 lncRNA downstream 160 6182839 ~ 6183069 (+) True G63503
TU72323 lncRNA downstream 1000 6183679 ~ 6183908 (+) True G63504
TU72324 lncRNA downstream 1723 6184402 ~ 6184611 (+) True G63505
TU72326 lncRNA downstream 6119 6188798 ~ 6189059 (+) True G63507
TU72329 lncRNA downstream 9470 6192149 ~ 6192700 (+) True G63510
CI01000010_06166731_06172965.mRNA mRNA upstream 9202 6166731 ~ 6173143 (+) True CI01000010_06166731_06172965
CI01000010_06154873_06157770.mRNA mRNA upstream 23827 6154873 ~ 6158518 (+) True CI01000010_06154873_06157770
CI01000010_06146390_06152584.mRNA mRNA upstream 29610 6146309 ~ 6152735 (+) True CI01000010_06146390_06152584
CI01000010_06116623_06143372.mRNA mRNA upstream 38283 6116524 ~ 6144062 (+) True CI01000010_06116623_06143372
CI01000010_06102935_06103344.mRNA mRNA upstream 78742 6102935 ~ 6103603 (+) False CI01000010_06102935_06103344
CI01000010_06242353_06250653.mRNA mRNA downstream 59674 6242353 ~ 6251322 (+) True CI01000010_06242353_06250653
CI01000010_06285808_06296322.mRNA mRNA downstream 103129 6285808 ~ 6296474 (+) True CI01000010_06285808_06296322
CI01000010_06303382_06311970.mRNA mRNA downstream 120222 6302901 ~ 6312278 (+) True CI01000010_06303382_06311970
CI01000010_06324209_06332002.mRNA mRNA downstream 141530 6324209 ~ 6333126 (+) True CI01000010_06324209_06332002
CI01000010_06346953_06366547.mRNA mRNA downstream 164274 6346953 ~ 6366741 (+) True CI01000010_06346953_06366547
TU72237 other upstream 392358 5756953 ~ 5757934 (+) True G63420
TU72219 other upstream 465095 5707971 ~ 5717250 (+) False G63405
TU72215 other upstream 475260 5695445 ~ 5707085 (+) False G63403
TU72351 other downstream 191879 6374558 ~ 6374667 (+) False G63524
TU72352 other downstream 191879 6374558 ~ 6374667 (+) True G63524
TU72350 other downstream 203163 6424211 ~ 6424688 (+) True CI01000010_06399511_06426913
TU72416 other downstream 403249 6585928 ~ 6617806 (+) True G63572
TU74882 other downstream 2849868 9032547 ~ 9038005 (+) False G65803

Expression Profile