CI01000010_06285808_06296322 (B3GNT3)


Basic Information

Item Value
gene id CI01000010_06285808_06296322
gene name B3GNT3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6285808 ~ 6296474 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_06285808_06296322.mRNA
GGTGGCACACAGAATGCTTCAACATAATATCACAGGCTGTGTTTTCCTGTGAGGGGAACTGCGCACTTCCTTTGGGGGATGTCACAGTGCCTGTTTTCTGCTATGTTTGGACAAAAGAGAGTAAAGTGAGGCAGGAAGATGGATTCTCTGCAAAATCCTGCTTGGTGACGATAATCATACAGAACAACTGTCAAACTGAATTTGAACTCAATGTAGCATGTACGAAGATGAGAAAGAAAAATGAGACAATAGCATTAATTCTCATAGGTGTTGTGTGCCTCTTCATTATCATGAACAAAAATGACACTGAAGACGACGTGACACTGAATAGCAAAGACACAGATGAGATGCTCCGTCATGAAACCGATTTGCTCAGATCTGAAACTCCCCAGCCTTTTTTTTCACGATGTCAGCAGAATACGTCTGCTTATAATGTGACAGGATTTTCTACTCTGCCAGGTCATATCCAAGATTTCCTGCTTTACCGACACTGTAGGAAGTTTCCCATGCTGCTTGACCAGCCTGATAAGTGTGGCGGACCCCTGAACTCTGCAGATGTCTTTCTTCTGCTGGTCATCAAGAGTTCTCCAGAAAACTACGATCGACGAGAAGTCCTGCGGAAAACATGGGCTAAGGAAAGACTGTACAAAGGTGTGTGGATCCGTAGAGTCTTCATAATCGGAACAACAAAAACTGGCTATGAGAAGCGCAGGTTGAATAAGCTATTGAGGCTGGAGAACAATGAGAACAAGGACATTTTGCAGTGGGACTTCAATGATTCGTTCTTTAACCTCACACTGAAGCAGATCCTTTTCTTAGAGTGGATGGAAAGATGGTGCCCAAATGCAAGATTTCTCTTAAACGGGGACGATGACATCTTTGCCAATACGTTTAACATGGTTGAGTATCTTCAAGGTCAAGAGGACAATGATGGAAGTAAACATCTCTTTACCGGGCACCTCATCCAGAACGTAGGGCCTATTAGACAGTCTTCAAGTAAATACTATGTCCCTGTGCAGGTTCAGGAGTCTGAGAGCTATCCTCCGTACTGTGGCGGAGGAGGCTTTCTTCTCTCCGGCTTCACGGCCAGAACAATCTACAAAATGTCTCACTCTATAATTCTATTGCCCATTGATGATGTTTACATGGGAATGTGTTTGGAAAAGGCTGGCCTCAAACCTACGTCCCACTTTGGTGTAAGAACTGCTGGTCTGCATGTCCCACCTGGGGACATCGACAAATTTCACCCTTGCTATTACAGAGAAATCATTTTAGTCCACAGATTTCTGCCGCACATGATTTTTGTGATGTGGAATGAAATACAAAACCCACATTTGCAATGTGGAAAGACAAATTCTGCTTTTTAGAGAATCCTAAACAAAAGAACAGGGTGTGTGATTAATTTTAAAGGGAAACATAATAGCTTGCTGAGTTGATGTGATCAAGCTTGTTTTCAATTAAATGTTTTTAAATGAATTAACTTTTTTCTACACCGGGTTTTACCAATGTCACTTTTCAA

Function

symbol description
b3gnt3 Enables N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity. Involved in poly-N-acetyllactosamine biosynthetic process. Predicted to be integral component of plasma membrane. Predicted to be active in Golgi membrane.

NR:

description
Zgc:86586

GO:

id name namespace
GO:0008921 lipopolysaccharide-1,6-galactosyltransferase activity molecular_function

KEGG:

id description
K07970 B3GNT3; beta-1,3-N-acetylglucosaminyltransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_06285808_06296322.mRNA True 1519 mRNA 0.42 2 6285808 6296474

Neighbor

gene id symbol gene type direction distance location
CI01000010_06242353_06250653 CABP4 coding upstream 34486 6242353 ~ 6251322 (+)
CI01000010_06166731_06172965 NA coding upstream 112665 6166731 ~ 6173143 (+)
CI01000010_06154873_06157770 NA coding upstream 127290 6154873 ~ 6158518 (+)
CI01000010_06146390_06152584 NA coding upstream 133073 6146309 ~ 6152735 (+)
CI01000010_06116623_06143372 ATP2B3B, ATP2B3, ATP2B3A coding upstream 141746 6116524 ~ 6144062 (+)
CI01000010_06303382_06311970 NA coding downstream 6427 6302901 ~ 6312278 (+)
CI01000010_06324209_06332002 NA coding downstream 27735 6324209 ~ 6333126 (+)
CI01000010_06346953_06366547 NA coding downstream 50479 6346953 ~ 6366741 (+)
CI01000010_06385742_06386887 B3GNT3 coding downstream 89268 6385740 ~ 6387238 (+)
CI01000010_06399511_06426913 NA coding downstream 103037 6399511 ~ 6427112 (+)
G63534 NA non-coding upstream 15776 6214621 ~ 6270032 (+)
G63519 NA non-coding upstream 31926 6236702 ~ 6253882 (+)
G63518 NA non-coding upstream 75350 6210163 ~ 6210458 (+)
G63517 NA non-coding upstream 75950 6209658 ~ 6209858 (+)
G63514 NA non-coding upstream 83600 6201804 ~ 6202208 (+)
G63533 NA non-coding downstream 144036 6440510 ~ 6440892 (+)
G63585 NA non-coding downstream 220442 6516916 ~ 6518163 (+)
G63578 NA non-coding downstream 241895 6538369 ~ 6626184 (+)
G63588 NA non-coding downstream 260886 6557360 ~ 6607987 (+)
G63620 NA non-coding downstream 414562 6711036 ~ 6719263 (+)
CI01000010_05789479_05790006 NA other upstream 495821 5788332 ~ 5790204 (+)
G63405 NA other upstream 568558 5707971 ~ 5717250 (+)
G63403 NA other upstream 578723 5695445 ~ 5707085 (+)
CI01000010_04640858_04683752 OSBPL9 other upstream 1631815 4640516 ~ 4683778 (+)
G62983 NA other upstream 1836481 4448172 ~ 4449327 (+)
G63524 NA other downstream 78084 6374558 ~ 6374667 (+)
G63572 NA other downstream 289454 6585928 ~ 6617806 (+)
G65803 NA other downstream 2736073 9032547 ~ 9038005 (+)
G65875 NA other downstream 2830836 9127310 ~ 9132112 (+)
G66014 NA other downstream 3222110 9518584 ~ 9519262 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036274 b3gnt3.4 coding NC_007119.7 CM002892.2 13630492 ~ 13641022 (-)
tiger barb (Puntius tetrazona) G61669 b3gnt3,LOC107665060,LOC107599054,LOC107755313 non-coding NC_056706.1 CM032075.1 6670282 ~ 6674468 (+)