G63578


Basic Information

Item Value
gene id G63578
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6538369 ~ 6626184 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU72422
CGGATTTCATCAAAAATACCTTAATTTGTGTTTGAAGATGAACGAAGGTCTTATGGGTGTGAAACGACATGAGGGTGAGTAATTAATGACAGACATTTCATTTCTGGGTGAACTAACCCTTTAAGAGAATGTAAAAAGGCAAAAAAAAATAATAATAATAATTTGTCTCACATTATCGGACTAGTGCATTGGAACTTGCAGTGTAAATGCAGCCTGCCCCTGTCTATTATAATGTTATTAATCAAACAATAATATTGGCAAGAGAAAAACAAAACCCACTCACTGCTATTAATTATTTCTTTGTTCTTTATTACTGACAGTTTACTGGAATAATTACTTGGAAAAACTTGAAGCAATAATGTTTACTTCCAGTAATTGAGATATACTTGAAGGCTACTTGCCATTGCTTTAATTTATTTGTTTATATTTATATTAATATTTAACTTCTTATATAAAAGAGTGTGTTAAATAGAATATTAGTTTTTGGTGTGAAACTGGTATAGAGTATAATGAACTATCACTGGTATTGTCGAAAGTAACCTGGATACATGCCTGAGAAGATCCCTGTCACTAATTTCGCTCTCAGCTCACCCAGAATATGTTTATCTTCGGCTAATGCAAAAGCAATGAAGCATTTTTCACTATTGACGGAAATAGCATGAAAAATTGAAGTGAGACCAAAAAATGTTTCTAAATGGTCTGGCGATGCAAATCAAATGACATATTATTTAGTCTTTTGGTGTGGTGTGCAACTTGAGGTTTTTAAAAAATGTATTCTGTGTTCCATTTGTTTTGCCTTAAATCACTGCAGAGCTCAGAAGTAAGTCATGTCTTCTCTCTTTCCTTTCCATTGGAACCCCTTTTCATTTTTACAAGTCTTATTCAGCAATATCAACCAACATGACGAACATTGAAAACATTTGAAGCTGGGCATCATTTTTATTTAGACTTGATATCCATTAACGACATTTAGACAAATGAGATTTGAATAGTTTACCCAACCTGTTAAGGTACTTGGAGGGAAAGGTTCTTCGCATCTTCTCAGCTTCAAATTTATCAGATGCCGCAATGTCCGAAATTCATTCATCTAGCCTGTACCAGATTTCCACAGAACACTGCACTTTGATCCTTTTAGTCGTACCACCATGTACAATCTGCTAGTCTGGTGGTCTGCAGTGTTTTCTTGCAAACACAAATCTATTGCAAATAATTTTTATTGAGATGCGTTTAGAGAAATACCAAATGTGAATGTTAAGAGACTGCATGAGATGTTTAGAGACAAGCTTCAGCATTTGGTACTCGTTTCCTTTCACTTGGTCGGTTCACTTTTAAAAATGACAGTTCGCCCAAAAAATGAAAATTCTGTCATCATTTATTCACCCTCATGTTGTTCCAAATGTGTATGTCATACTGATGTCTGATTTGTGAATGAATTATGAATGTTTCAGAATAAATTGAATTGAATGATCTGGTTGCAGTCCTTATGCATCGTCTTCACACAAAAAAAGAGTGACCGATGCATTATACATTTATCCGTTTGTGTTCCACAAGGGAAAGAAAGTCATACAGGTTTGGAACGACATAAGGCTGATTAAATGATGAACATAATTTTAATTTTTGGCTGAAATAATCCTTTAAGTGCAGTAACATTTTCTGGCCGTGTTATAGGTTCTCTGATGTGAATCGCCAGTCCTGCCTGTTTGGCCCGTGGTCAAAGTGAAAGCGCAACTGCTGAGCACAACAATTCATTTATAATGTATTTGGCCTTCACTTTTACGAGACCACATAAACATTCCCTTGCCTAATGCATACAATCATAAAATTCTATAAATATCTGCACATGAAATGCTTCGTAAACTCAAATCGGCCCCTGTTGCTCAAACTGCGGAGAAGGTAACAATTTCATCTGGAGTGCAGGGAACTATGGAGGTCTGGGTACAGAAAAAAAACAGACCAATTTTGGCCCTCCCAAAATTGAGAATTCATCTTTAAAACAGTACAAGCACATGTGAAAAAGTACAAAGTGTCCACCTTTGAGTTTCCATAAAGCTTGCACACTTGAGTTTTTCACACTTGTTTTTTATTTTTTATTGGGAGGGGGAGAGTTTGAAACAAATGGATGGTTGGGATTGGTTTAGGTTACTTTGTTAACTCTGGAGAAGACATTTACAATAATTTTGAAGAAGCCATCACGTTATGTTTATATTCTGCATGTGAGTATCATTGACAAGCATTTTTCTCAAGACATTTTCTTAAGATCTGACAAAAAGTTCCTTGTTCTACACTTACAAAACTCTCCTCGCCATCTTCCCTGTCCCTTCTGGGTTTTGTCCAAGCTTTCCTAGAGGAAAGCCAAGCTTTGTGCATTTAGAGAGTCTTTGGTGTTAGCTTTCTGAATTCATAGGCACTGAATTAGGCTAATGCTAATGCATCAGATCTGTCATTACCATGGACCACAAACCATGCGTCCTCCACATTCAGTTCATCTGTTTGCACATGTAACACTGGCTCCATTCTGACATGATATAATGAATGTTTTCAGCTACATGTGTTTTAATGTCTGCAGACTCAGTGTTGACTTATAAGGTGGTGTTCGAGGTGTTTTTACAAATTTTGCACCGTTCTTGTTACAGTAGAGCTGTTTAGTCTTGACGTCAAGTTGTAGGCCTGCCTGCCAGCTGCCAAAAAACGATAATGTGTTAAATAGCAATTTATAGATTATGGTTTATGATTTACAATCAAAAGTCTGGTTAACATGACCTTACTTGAATTTCAGGTTTGATGATATAAATTACACACAGCCATAACTCAAATGAGAATTCTGACCACAAGTATGAGAGTTACTTGTGATATATAATATATATGTATATATATATATATATATATATATATANNTATATATATATATATATATATACATACACACACACATACACACACACACAGTGGCAAGAAAAAGTTTGTGAACCCCTTGCAGAATCTGTAAAAATGTGCAAAATTTTAACAAAATAAGAGATCATACAAAATGCATGTTATTTTTTTAGTACTGTCCTGAGTAAGATATTTTACATAAAAGATGTTTACATATAATCCATAAGACAAAAAAATAGCTGAATTTATTAAAATGACCCAGTTCAAAAGTTTGTGAACCATTGATTCTTAATACCGTGTGTGGTTACCTGGATGATCTACGACTGTTTTTTTGTTTTGTGATGGTTGTTCACGAGTCTCTTGTTTGTTCTGAGCAGTTAAACTGAGCTCTGTTCTTCAGAAAAAAATCTCCAGGTCCTGCAGATTCTTCAGTTTTCCACCATCTTTTGCATATTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU72422 True 3328 lncRNA 0.35 2 6538369 6626184

Neighbor

gene id symbol gene type direction distance location
CI01000010_06502317_06502607 NA coding upstream 35696 6502317 ~ 6502673 (+)
CI01000010_06484929_06492872 CCDC124 coding upstream 45327 6484835 ~ 6493042 (+)
CI01000010_06399511_06426913 NA coding upstream 111257 6399511 ~ 6427112 (+)
CI01000010_06385742_06386887 B3GNT3 coding upstream 151131 6385740 ~ 6387238 (+)
CI01000010_06346953_06366547 NA coding upstream 171628 6346953 ~ 6366741 (+)
CI01000010_06641409_06655700 SPAG17 coding downstream 15069 6641253 ~ 6655709 (+)
CI01000010_06656425_06657016 SPAG17 coding downstream 30241 6656425 ~ 6657034 (+)
CI01000010_06663699_06664352 NA coding downstream 35703 6661887 ~ 6664720 (+)
CI01000010_06666109_06680320 DENND2DA coding downstream 39925 6666109 ~ 6680320 (+)
CI01000010_06720407_06725929 SLC2A6 coding downstream 93443 6719627 ~ 6727243 (+)
G63585 NA non-coding upstream 20206 6516916 ~ 6518163 (+)
G63533 NA non-coding upstream 97477 6440510 ~ 6440892 (+)
G63534 NA non-coding upstream 268337 6214621 ~ 6270032 (+)
G63519 NA non-coding upstream 284487 6236702 ~ 6253882 (+)
G63518 NA non-coding upstream 327911 6210163 ~ 6210458 (+)
G63620 NA non-coding downstream 84852 6711036 ~ 6719263 (+)
G63645 NA non-coding downstream 141889 6768073 ~ 6768461 (+)
G63709 NA non-coding downstream 323351 6949535 ~ 6949778 (+)
G63748 NA non-coding downstream 387107 7013291 ~ 7052524 (+)
G63753 NA non-coding downstream 463960 7090144 ~ 7093334 (+)
G63524 NA other upstream 113681 6374558 ~ 6374667 (+)
CI01000010_05789479_05790006 NA other upstream 748382 5788332 ~ 5790204 (+)
G63405 NA other upstream 821119 5707971 ~ 5717250 (+)
G63403 NA other upstream 831284 5695445 ~ 5707085 (+)
CI01000010_04640858_04683752 OSBPL9 other upstream 1884376 4640516 ~ 4683778 (+)
G65803 NA other downstream 2406363 9032547 ~ 9038005 (+)
G65875 NA other downstream 2501126 9127310 ~ 9132112 (+)
G66014 NA other downstream 2892400 9518584 ~ 9519262 (+)
G66037 NA other downstream 2936532 9562716 ~ 9563811 (+)
G66017 NA other downstream 3062135 9688319 ~ 9691077 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G76844 NA non-coding NC_047599.1 CM018545.1 4242262 ~ 4242507 (+)
tiger barb (Puntius tetrazona) G61612 kcnn1b,kcnn1,LOC107725296,LOC107598990,LOC107700497,LOC107557189 non-coding NC_056706.1 CM032075.1 6602842 ~ 6608427 (+)