Gene
RNA
| Item | Value |
|---|---|
| gene id | G63620 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000010 |
| NCBI id | null |
| chromosome length | 12265998 |
| location | 6711036 ~ 6719263 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU72465 | True | 979 | lncRNA | 0.47 | 9 | 6711036 | 6719263 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000010_06666109_06680320 | DENND2DA | coding | upstream | 30716 | 6666109 ~ 6680320 (+) |
| CI01000010_06663699_06664352 | NA | coding | upstream | 46316 | 6661887 ~ 6664720 (+) |
| CI01000010_06656425_06657016 | SPAG17 | coding | upstream | 54002 | 6656425 ~ 6657034 (+) |
| CI01000010_06641409_06655700 | SPAG17 | coding | upstream | 55327 | 6641253 ~ 6655709 (+) |
| CI01000010_06572517_06584093 | NA | coding | upstream | 126904 | 6572517 ~ 6584132 (+) |
| CI01000010_06720407_06725929 | SLC2A6 | coding | downstream | 364 | 6719627 ~ 6727243 (+) |
| CI01000010_06731227_06734221 | NA | coding | downstream | 11964 | 6731227 ~ 6734914 (+) |
| CI01000010_06855220_06945434 | FCN2, FIBCD1 | coding | downstream | 135957 | 6855220 ~ 6945434 (+) |
| CI01000010_06954712_06970665 | TRAF1 | coding | downstream | 234768 | 6954031 ~ 6970939 (+) |
| CI01000010_06978661_07003520 | PHF19 | coding | downstream | 258336 | 6977599 ~ 7003929 (+) |
| G63578 | NA | non-coding | upstream | 84852 | 6538369 ~ 6626184 (+) |
| G63588 | NA | non-coding | upstream | 103049 | 6557360 ~ 6607987 (+) |
| G63585 | NA | non-coding | upstream | 192873 | 6516916 ~ 6518163 (+) |
| G63533 | NA | non-coding | upstream | 270144 | 6440510 ~ 6440892 (+) |
| G63534 | NA | non-coding | upstream | 441004 | 6214621 ~ 6270032 (+) |
| G63645 | NA | non-coding | downstream | 48810 | 6768073 ~ 6768461 (+) |
| G63709 | NA | non-coding | downstream | 230272 | 6949535 ~ 6949778 (+) |
| G63748 | NA | non-coding | downstream | 294028 | 7013291 ~ 7052524 (+) |
| G63753 | NA | non-coding | downstream | 370881 | 7090144 ~ 7093334 (+) |
| G63764 | NA | non-coding | downstream | 413680 | 7132943 ~ 7133153 (+) |
| G63572 | NA | other | upstream | 93230 | 6585928 ~ 6617806 (+) |
| G63524 | NA | other | upstream | 286348 | 6374558 ~ 6374667 (+) |
| CI01000010_05789479_05790006 | NA | other | upstream | 921049 | 5788332 ~ 5790204 (+) |
| G63405 | NA | other | upstream | 993786 | 5707971 ~ 5717250 (+) |
| G63403 | NA | other | upstream | 1003951 | 5695445 ~ 5707085 (+) |
| G65803 | NA | other | downstream | 2313284 | 9032547 ~ 9038005 (+) |
| G65875 | NA | other | downstream | 2408047 | 9127310 ~ 9132112 (+) |
| G66014 | NA | other | downstream | 2799321 | 9518584 ~ 9519262 (+) |
| G66037 | NA | other | downstream | 2843453 | 9562716 ~ 9563811 (+) |
| G66017 | NA | other | downstream | 2969056 | 9688319 ~ 9691077 (+) |
