XLOC_036274 (b3gnt3.4)


Basic Information

Item Value
gene id XLOC_036274
gene name b3gnt3.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13630492 ~ 13641022 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070901
GAGATCTGCACCACAGCGAGTCATTAGAGGAAGGAGTTGGAGCTGTTATCAGCAGGGCGCATATGGTCGCTGTAGCTCATTTCCACATTAACAGAATCAATATTTGTGTCGACGTTACCCCATGAAGCGAGTTAACAGTCAGGTCTGAAAGCcattgttttaattcagctagcCAAGGATTACTGCCAAGACACCCGCCCTCCCATTGACCCTGATTGGCCCTGGCCTGAACCAAAACTGgggtatatattttaaaagGTGCAAAGATGAAAAAGAAAACAGTGGACATTCTAGCATTATTTCTGACAGGTGTTGTGTGCCTGCtcattattataaacaaaaatgaCTCTAAAGAAGAAGTGAAAGAAAAGAgcaaagaaaagcatgaaaaacTTCATGACCTAACAGATTTCCCCAGAACTGAAACTCCTCAGCCATTATCTACACGTTGTGAGCTGAATATCTCAGCTTATAATATTACTGAATTCTCTACTCTGCCAGATCATATCAAAGACTTTCTGCTTTACCGACACTGTAAGAGTTTTCCCATGATTCTCGATGTGCCTGATAAGTGTGGTGGAGCTCAAAACTCTGCAGATGTCTTCCTCCTGCTGGTCATCAAGAGTTCTCCAGAGAATTACGATCGCAGAGAAGTTCTGCGGAAAACATGGGCTGAGGAGAGACTGCACAAAGGTGTGTGGATCCGTCGAGTCTTTATAATTGGTACAACTCAAAGTGGCTTTGAGAAACGCAGGCTGAATAGGCTACTGAAGCTGGAGAACAATGagaacaaggacattttacaATGGGACTTCAATGATTCATTCTTCAACCTCACACTGAAGCAGATCCTTTTCTTAGAGTGGATGGACAGAAGGTGCCCGAACGCCAGATTCCTTTTAAATGGAGACGATGACATTTTTGCCAATACGTTTAACATGATCGAGTATCTACAGGGTCAAGAAGACAATGATGGAAGGAGACATCTCTTTGCTGGACACCTAATCCAGAATGTAGGGCCTATAAGAAATCCTTCAAGTAAATACTATGTCCCAGTTCAGATACAGGAGTCCGAGAGTTATCCTCCGTATTGTGGTGGAGGAGGCTTTCTACTGTCCGGCTTCACAGCCAGAACGATCTACAACATGTCACACTCTGTAATTCTGCTGCCCATTGATGACGTTTATATGGGAATGTGTCTGGAAAAGGCTGGCCTCAAACCTACATCCCATTTTGGCGTACGAACTGCTGGTCTGAGTGTTCCAGCTGAAAATGTCGACAAATTTGACCCTTGTTATTACAGAGAAATCATTTTAGTCCACAGGTTTCTGCCACACATGATCTTTGTGATGTGGAATGAAATACAAAACCCAGATTTGAAATGCGGAAAGACCAATGTCAATAGAACAAAAGAACAGGGTGTGTGA

Function

symbol description
b3gnt3.4 Predicted to enable UDP-glycosyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Is expressed in blood. Orthologous to several human genes including B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0030311 poly-N-acetyllactosamine biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008532 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8875 Predicted to enable UDP-glycosyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Is expressed in blood. Orthologous to several human genes including B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3).

Ensembl:

ensembl_id ENSDARG00000058100

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070901 True 1427 mRNA 0.43 3 13630492 13641022

Neighbor

gene id symbol gene type direction distance location
XLOC_036273 b3gnt3.3 coding downstream 30218 13597405 ~ 13600274 (-)
XLOC_036272 b3gnt3.2 coding downstream 55728 13572531 ~ 13574764 (-)
XLOC_036271 b3gnt3.1 coding downstream 88978 13534385 ~ 13541514 (-)
XLOC_036270 pimr104 coding downstream 144234 13485196 ~ 13486258 (-)
XLOC_036269 pimr105 coding downstream 158576 13470855 ~ 13471916 (-)
XLOC_036275 si:dkey-258f14.2 coding upstream 2777 13643799 ~ 13735572 (-)
XLOC_036276 si:dkey-258f14.3 coding upstream 12677 13653699 ~ 13678415 (-)
XLOC_036277 NA coding upstream 73920 13714942 ~ 13716577 (-)
XLOC_036278 cabp4 coding upstream 153763 13794785 ~ 13823098 (-)
XLOC_036279 CT025854.2 coding upstream 236706 13877728 ~ 13877845 (-)
XLOC_036263 NA non-coding downstream 324444 13302679 ~ 13306048 (-)
XLOC_036261 BX119975.1 non-coding downstream 391400 13238973 ~ 13239092 (-)
XLOC_036253 NA non-coding downstream 920268 12686691 ~ 12710224 (-)
XLOC_036251 NA non-coding downstream 961080 12451451 ~ 12669412 (-)
XLOC_036286 BX248385.1 non-coding upstream 451772 14092794 ~ 14094516 (-)
XLOC_036294 BX294388.2 non-coding upstream 773331 14414353 ~ 14452438 (-)
XLOC_036296 NA non-coding upstream 833747 14474769 ~ 14482457 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_06285808_06296322 B3GNT3 coding CI01000010 null 6285808 ~ 6296474 (+)
tiger barb (Puntius tetrazona) G61669 b3gnt3,LOC107665060,LOC107599054,LOC107755313 non-coding NC_056706.1 CM032075.1 6670282 ~ 6674468 (+)