XLOC_036273 (b3gnt3.3)


Basic Information

Item Value
gene id XLOC_036273
gene name b3gnt3.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13597405 ~ 13600274 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070900
GTGCAGAAACTGTGATTCCCTTTGTCTTGGACACACTGGCTTTActtaaaacaaaactgcaaacatCTCTCAGAGGCTCTCAAAAGAGGTGAAAAGATGAGAAAGAAGAATGTGGAATCTGCACTATTATTTCTAACAGGTGTCGTGTGCCTGCTCATTATCACCAACAAAAATGACTCTAAAGAAGATGATGTGAATCTAAAGAGcaaaaaaacagaagaaatcCTTCATAATCAAGAAGATTTCTCTAGAACTGAAACTCTTCCGCCATCGACTTCATATTGTCAGCCGAATATGTCATTTTATAAACTTCCTGAATTCTCCACTCTGCCAGATCATATCAAAGACTTTCTGCTTTACCGACACTGTAAGAGTTTTCCCATGATTCTCGATGTGCCTGATAAGTGTGGTGGAGCTCAAAACTCTGCAGATGTCTTCCTCCTGCTGGTCATCAAGAGTTCTCCGGAGAATTACGATCGCAGAGAAGTTCTGCGGAAAACATGGGCTGAGGAGAGATTGCACAAAGGGGTGTGGATCCGTCGAATCTTCATAATCGGTACAAGTAGTAGTGGCTTAGGGAAACGCAGGATGAATAGGCTACTGAAGCTGGAGAACAATGagaacaaggacattttacaATGGGACTTCAATGATTCATTCTTCAACCTCACACTGAAGCAGATCCTTTTCTTAGAGTGGATGGACAGAAGGTGCCCACACGCCAGATTCCTTTTAAATGGAGACGATGACATTTTTGCCAATACGTTTAACATGATCGAGTATCTTCAGGGTCAAGAAGACAATGATGGAAGTAGACATCTCTTTACTGGGAACATCATTCAGAACGTAGGCCCTATAAGAAAGCGTTCAAGTAAATACTATATCCCGGTTCAGATACAGGAGTCTGACATTTATCCTCCATATTGTGGTGGAGGGGGATTTCTACTGTCCGGCTTCACAGCCAGAACGATCTACAACATGTCACACTCTGTAATTCTGCTGCCCATTGATGACGTTTACATGGGAATGTGTCTGAAGAAGGCCGGCATCAAACCTACGTCCCATTTTGGCGTAAGAACTGCTGGTTTGCGTGTCCCAGTTGGAATTGTCGACAAATTTGACCCTTGCTATTACAGAGAAATCCTTTTAGTCCACAGATTTCTGCCACACATGATTTTTGTGATGTGGGATGAAATACAAAACCCAAATTTGCGATGTGCAAAGAACAATTTCAAAAGAACAAAAGAGCAGGGTGTGTTTCAAAGGGAGATATAA

Function

symbol description
b3gnt3.3 Predicted to enable UDP-glycosyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0030311 poly-N-acetyllactosamine biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008532 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-12 Predicted to enable UDP-glycosyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GNT3 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3).

Ensembl:

ensembl_id ENSDARG00000093521

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070900 True 1275 mRNA 0.42 2 13597405 13600274

Neighbor

gene id symbol gene type direction distance location
XLOC_036272 b3gnt3.2 coding downstream 22641 13572531 ~ 13574764 (-)
XLOC_036271 b3gnt3.1 coding downstream 55891 13534385 ~ 13541514 (-)
XLOC_036270 pimr104 coding downstream 111147 13485196 ~ 13486258 (-)
XLOC_036269 pimr105 coding downstream 125489 13470855 ~ 13471916 (-)
XLOC_036268 CR354547.2 coding downstream 143124 13453219 ~ 13454281 (-)
XLOC_036274 b3gnt3.4 coding upstream 30218 13630492 ~ 13641022 (-)
XLOC_036275 si:dkey-258f14.2 coding upstream 43525 13643799 ~ 13735572 (-)
XLOC_036276 si:dkey-258f14.3 coding upstream 53425 13653699 ~ 13678415 (-)
XLOC_036277 NA coding upstream 114668 13714942 ~ 13716577 (-)
XLOC_036278 cabp4 coding upstream 194511 13794785 ~ 13823098 (-)
XLOC_036263 NA non-coding downstream 291357 13302679 ~ 13306048 (-)
XLOC_036261 BX119975.1 non-coding downstream 358313 13238973 ~ 13239092 (-)
XLOC_036253 NA non-coding downstream 887181 12686691 ~ 12710224 (-)
XLOC_036251 NA non-coding downstream 927993 12451451 ~ 12669412 (-)
XLOC_036279 CT025854.2 non-coding upstream 277454 13877728 ~ 13877845 (-)
XLOC_036286 BX248385.1 non-coding upstream 492520 14092794 ~ 14094516 (-)
XLOC_036294 BX294388.2 non-coding upstream 814079 14414353 ~ 14452438 (-)
XLOC_036296 NA non-coding upstream 874495 14474769 ~ 14482457 (-)

Expression


Co-expression Network