XLOC_036276 (si:dkey-258f14.3)


Basic Information

Item Value
gene id XLOC_036276
gene name si:dkey-258f14.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13653699 ~ 13678415 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070903
AGGACGCCGAGCAAGGCATGGAACACCTTGGTGCATTTCTACTGCTGTGGACAGGAGTGTCGTGTTTACCTTTAACGGAAGGTTTCCCAAAGTGCACCGTGCttcagtttgtgtgtgcgaaCAGCAGATGTGTATCTCTGTCTTCGCGCTGTGATGCTGTGAATGACTGTGGAGATGGCAGCGATGAAATCTCCTGCTGGAACTGCACTAATGGCTCTTTCCACTGTGTGGCGTCAGAGAGCTGTGTTtcctccagcagtgtgtgtgatgGCAGGCCGGACTGCGCTGATGGAGCAGACGAACAGTTAGACACATGCACATCATTTTCTCAAGCACAGCCATGTGCACGTTCAGAGTTCACATGCACTAATGGACAATGTGTGCCCAATTCATGGAGGTGTGACCACTCCAGTGACTGTAAAGATGGCAGCGATGAAGAAGACTgtgATCACAATGAATGTGCGGTCAATAACGGTGGCTGTTCACACACATGTATCGATCTGCCTTTCGGCTTCAGATGTGACTGTCCTAAAGGAATGAGGCTGGTCCAGGACACACACTGTGAGGTTGTGGACCAGTGTCTTGACGCAGACGTGTGTGATCAGATTTGTGTCCATTCCAATGGCTCTGTTGTTTGTGACTGTCAGGATGGATATCAGCTGACCGCCGGGACGGGACAGTGCAGGGCAACAGGTGGCCTTGCTCATGTGGCGGTCAGCACTCAAGAGGGCATTAAAATGATGGACCTCAGCGGCTCTGAGGAAAGAAACATCACAGATAAAAGACTCTCACCAGGACCTGTTTCTGCACTGAATGCTCACAACACACTATACTGGAGCAGTCCAGAGAATGACATCATCTACAGGATGTCCTTAGACTCCGGTGACCACAGACCAGCTGTGTGGTTGAAGGCTTCAAAAGGCATTGTGGGATTGGCAGTGGACTGGATCCATGAGAGTCTGTATTGGATCAGCACCAGTACTCGTGCTTTACACATGGCCTCTCTGAAAAACACCAAGCAAAGGCTGCTTATCTCTGGGCTCTCTAAACCTACTGCTGTTGCTGTCCAGCCACTGTTAGGGTATGTGTTTTGGGCAGAAGGTGGGGAGTCTGCCAGAATTGAGCGTGTCGGTTTGGACGGGGAAAGCAGATTTGCATTGGTAGTTTCATTTGTACGTAACCCTGTCGCAATCTCACTAGATATCCCTCGTGGGCTTCTGTACTGGGCCGACTCCGGTCTGCGCTCAATATCAAGGGTTTTATTTGATGGACAATATAGAAAGACGGTTGTAGAGTCCAATGGATACCTGGATCAGCCATTTGGACTGGCCATATTTGAGagTCGAGTGTACTGGAGTGATCAGTTGACCAACTCTATTTGTAGTGCAGACAAGCACAATGGCACCATGCTCAGAGTGCCTCAGAGACTGGGTTCTGCTTCACCAGCTGGACTGGTCATCCTTC
>TCONS_00070904
AGGACGCCGAGCAAGGCATGGAACACCTTGGTGCATTTCTACTGCTGTGGACAGGAGTGTCGTGTTTACCTTTAACGGAAGGTTTCCCAAAGTGCACCGTGCttcagtttgtgtgtgcgaaCAGCAGATGTGTATCTCTGTCTTCGCGCTGTGATGCTGTGAATGACTGTGGAGATGGCAGCGATGAAATCTCCTGCTGGAACTGCACTAATGGCTCTTTCCACTGTGTGGCGTCAGAGAGCTGTGTTtcctccagcagtgtgtgtgatgGCAGGCCGGACTGCGCTGATGGAGCAGACGAACAGTTAGACACATGCACATCATTTTCTCAAGCACAGCCATGTGCACGTTCAGAGTTCACATGCACTAATGGACAATGTGTGCCCAATTCATGGAGGTGTGACCACTCCAGTGACTGTAAAGATGGCAGCGATGAAGAAGACTgtgATCACAATGAATGTGCGGTCAATAACGGTGGCTGTTCACACACATGTATCGATCTGCCTTTCGGCTTCAGATGTGACTGTCCTAAAGGAATGAGGCTGGTCCAGGACACACACTGTGAGGTTGTGGACCAGTGTCTTGACGCAGACGTGTGTGATCAGATTTGTGTCCATTCCAATGGCTCTGTTGTTTGTGACTGTCAGGATGGATATCAGCTGACCGCCGGGACGGGACAGTGCAGGGCAACAGGTGGCCTTGCTCATGTGGCGGTCAGCACTCAAGAGGGCATTAAAATGATGGACCTCAGCGGCTCTGAGGAAAGAAACATCACAGATAAAAGACTCTCACCAGGACCTGTTTCTGCACTGAATGCTCACAACACACTATACTGGAGCAGTCCAGAGAATGACATCATCTACAGGTGCAAAGCAAGATCCAGCATTTGTCTGATTCATCACTTATTGTTTGCACTtccgctttaaaaaaaaaaaaaaatctttaaagc
>TCONS_00070905
AGGACGCCGAGCAAGGCATGGAACACCTTGGTGCATTTCTACTGCTGTGGACAGGAGTGTCGTGTTTACCTTTAACGGAAGGTTTCCCAAAGTGCACCGTGCttcagtttgtgtgtgcgaaCAGCAGATGTGTATCTCTGTCTTCGCGCTGTGATGCTGTGAATGACTGTGGAGATGGCAGCGATGAAATCTCCTGCTGGAACTGCACTAATGGCTCTTTCCACTGTGTGGCGTCAGAGAGCTGTGTTtcctccagcagtgtgtgtgatgGCAGGCCGGACTGCGCTGATGGAGCAGACGAACAGTTAGACACATGCACATCATTTTCTCAAGCACAGCCATGTGCACGTTCAGAGTTCACATGCACTAATGGACAATGTGTGCCCAATTCATGGAGGTGTGACCACTCCAGTGACTGTAAAGATGGCAGCGATGAAGAAGACTgtggtatgttttttttaaggaataggccattttttctttatttttggacTTTAAAGTCATAGTTTAACCAAAATTTACAttcctgttaatttactcacccatgGGTTATCCAAAATGTAGGCGACCTTTCTCTTAGGTAGactattaaaaggatagttcactcataaatgaaaatttactcacccgCAAGTGGTTCCATACCTTTATgaatttcctttttctgttgaacacattcaAAAAAGTCATTTTGTAAGATGCTGGagacctgtaatcattgacttccattgtatttagTTTTCCTACTGTGAAACGCAATGGTTAAtgcaggtttccagcattcttcaaaataacttttttaagtgtgttcaacagaaaaaagaatccCAAACATGTTTTGGTTCAGTAAATGACAGAATCttctgttttgggtgaactgtttttAGCTATATCTGTGATGTATATTAagaccatttatgtaaagctgctttgacacaatctacattgtaaaagcgctatacaaataaagctgaatttaat

Function

symbol description
si:dkey-258f14.3 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-43 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane.

Ensembl:

ensembl_id ENSDARG00000075974

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070903 False 1464 mRNA 0.50 9 13653699 13678415
TCONS_00070904 False 949 lncRNA 0.49 5 13666427 13678415
TCONS_00070905 True 981 mRNA 0.41 2 13672285 13678415

Neighbor

gene id symbol gene type direction distance location
XLOC_036274 b3gnt3.4 coding downstream 12677 13630492 ~ 13641022 (-)
XLOC_036273 b3gnt3.3 coding downstream 53425 13597405 ~ 13600274 (-)
XLOC_036272 b3gnt3.2 coding downstream 78935 13572531 ~ 13574764 (-)
XLOC_036271 b3gnt3.1 coding downstream 112185 13534385 ~ 13541514 (-)
XLOC_036270 pimr104 coding downstream 167441 13485196 ~ 13486258 (-)
XLOC_036277 NA coding upstream 36527 13714942 ~ 13716577 (-)
XLOC_036278 cabp4 coding upstream 116370 13794785 ~ 13823098 (-)
XLOC_036279 CT025854.2 coding upstream 199313 13877728 ~ 13877845 (-)
XLOC_036280 serping1 coding upstream 282240 13960655 ~ 13972626 (-)
XLOC_036281 igf3 coding upstream 300071 13978486 ~ 13985032 (-)
XLOC_036263 NA non-coding downstream 347651 13302679 ~ 13306048 (-)
XLOC_036261 BX119975.1 non-coding downstream 414607 13238973 ~ 13239092 (-)
XLOC_036253 NA non-coding downstream 943475 12686691 ~ 12710224 (-)
XLOC_036251 NA non-coding downstream 984287 12451451 ~ 12669412 (-)
XLOC_036286 BX248385.1 non-coding upstream 414379 14092794 ~ 14094516 (-)
XLOC_036294 BX294388.2 non-coding upstream 735938 14414353 ~ 14452438 (-)
XLOC_036296 NA non-coding upstream 796354 14474769 ~ 14482457 (-)

Expression


Co-expression Network