Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_036251 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 12451451 ~ 12669412 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007215 | glutamate receptor signaling pathway | biological_process |
| GO:0046031 | ADP metabolic process | biological_process |
| GO:0009584 | detection of visible light | biological_process |
| GO:0006096 | glycolytic process | biological_process |
| GO:0007267 | cell-cell signaling | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0099177 | regulation of trans-synaptic signaling | biological_process |
| GO:0098916 | anterograde trans-synaptic signaling | biological_process |
| GO:0006733 | obsolete oxidoreduction coenzyme metabolic process | biological_process |
| GO:0099504 | synaptic vesicle cycle | biological_process |
| GO:0019359 | nicotinamide nucleotide biosynthetic process | biological_process |
| GO:0019362 | pyridine nucleotide metabolic process | biological_process |
| GO:0019363 | pyridine nucleotide biosynthetic process | biological_process |
| GO:0009135 | purine nucleoside diphosphate metabolic process | biological_process |
| GO:0006757 | ATP generation from ADP | biological_process |
| GO:0042866 | pyruvate biosynthetic process | biological_process |
| GO:0099536 | synaptic signaling | biological_process |
| GO:0099537 | trans-synaptic signaling | biological_process |
| GO:0072524 | pyridine-containing compound metabolic process | biological_process |
| GO:0072525 | pyridine-containing compound biosynthetic process | biological_process |
| GO:0009179 | purine ribonucleoside diphosphate metabolic process | biological_process |
| GO:0098742 | cell-cell adhesion via plasma-membrane adhesion molecules | biological_process |
| GO:0009185 | ribonucleoside diphosphate metabolic process | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0050804 | modulation of chemical synaptic transmission | biological_process |
| GO:0050806 | positive regulation of synaptic transmission | biological_process |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0046496 | nicotinamide nucleotide metabolic process | biological_process |
| GO:0016052 | carbohydrate catabolic process | biological_process |
| GO:0097060 | synaptic membrane | cellular_component |
| GO:0044456 | obsolete synapse part | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0098794 | postsynapse | cellular_component |
| GO:0030276 | clathrin binding | molecular_function |
| GO:0008066 | glutamate receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070424-245 | Predicted to enable signaling receptor binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to human FIBCD1 (fibrinogen C domain containing 1). |
| ensembl_id | ENSDARG00000074640 ENSDARG00000093851 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00072009 | False | 2589 | lncRNA | 0.49 | 7 | 12451451 | 12669113 |
| TCONS_00070867 | False | 790 | mRNA | 0.46 | 2 | 12451739 | 12468744 |
| TCONS_00070868 | False | 1365 | processed_transcript | 0.55 | 7 | 12452086 | 12604702 |
| TCONS_00072010 | False | 2043 | lncRNA | 0.51 | 8 | 12452086 | 12669412 |
| TCONS_00070869 | False | 4409 | processed_transcript | 0.45 | 6 | 12465299 | 12668565 |
| TCONS_00070870 | True | 1329 | processed_transcript | 0.50 | 5 | 12521352 | 12669091 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_036250 | traf1 | coding | downstream | 18766 | 12408840 ~ 12432685 (-) |
| XLOC_036249 | phf19 | coding | downstream | 48374 | 12340247 ~ 12403077 (-) |
| XLOC_036248 | dab2ipa | coding | downstream | 186930 | 12134127 ~ 12264521 (-) |
| XLOC_036247 | NA | coding | downstream | 326077 | 12029473 ~ 12125374 (-) |
| XLOC_036246 | med27 | coding | downstream | 463386 | 11884671 ~ 11988065 (-) |
| XLOC_036253 | NA | coding | upstream | 17279 | 12686691 ~ 12710224 (-) |
| XLOC_036254 | si:dkey-104n9.1 | coding | upstream | 173888 | 12843300 ~ 12847486 (-) |
| XLOC_036255 | slc2a6 | coding | upstream | 184693 | 12854105 ~ 12867434 (-) |
| XLOC_036256 | dennd2da | coding | upstream | 319960 | 12989372 ~ 13029297 (-) |
| XLOC_036257 | si:dkey-208b23.5 | coding | upstream | 366809 | 13036221 ~ 13046089 (-) |
| XLOC_036229 | FO834835.1 | non-coding | downstream | 2011607 | 10439725 ~ 10439844 (-) |
| XLOC_036228 | NA | non-coding | downstream | 2124395 | 10323325 ~ 10327056 (-) |
| XLOC_036227 | CT573497.2 | non-coding | downstream | 2399318 | 10052019 ~ 10052133 (-) |
| XLOC_036222 | NA | non-coding | downstream | 3419122 | 9029054 ~ 9032329 (-) |
| XLOC_036261 | BX119975.1 | non-coding | upstream | 569561 | 13238973 ~ 13239092 (-) |
| XLOC_036263 | NA | non-coding | upstream | 633267 | 13302679 ~ 13306048 (-) |
| XLOC_036277 | NA | non-coding | upstream | 1045530 | 13714942 ~ 13716577 (-) |
| XLOC_036279 | CT025854.2 | non-coding | upstream | 1208316 | 13877728 ~ 13877845 (-) |
