RNA id: TCONS_00072009


Basic Information

Item Value
RNA id TCONS_00072009
length 2589
lncRNA type sense_over
GC content 0.49
exon number 7
gene id XLOC_036251
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 12451451 ~ 12669412 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGAGGGAGGGGGACGGATTTCAGGAGCTCTCCACCACAAACGCGTGTCCACACACCACAGGAATGAAGCAAAAACAAACGGATGCTTAACACAGTTATTACGCAAAACTTTGTGGTTTTTCGTCTGAATTCGCGTGTTTTTGTCTCTCGCGGACTGGACAGGAAAGTTTTTTATATATCTGAGAAGGAATAACGTTACCTGCCAGCAAACGAACACATCATCCGCAAACCGTCACACCTTCTCCTCAGCGTTTGAGTGCGCTGAGGACATCGGATCTGCTTTTGGACTGCATTTTTTGTTCGTTTCTTTTTAAGGGTGAAGGGACAAGTCCCTTGAAGTACGtatgtttttcttttacaaaatgaGTGTGGATCTGTAGTTCTGTGTCCCGGTTCTCAGTAGGTTTGTGCGGAAGAGCTTGAGAAATAGTTTAGTTCCCGTAGACTGTTGTGTTGTTTCCCCCTTTTCTATTTCTTGGATGCTGGAATTTAAAACTGACAGTCCCGTTCTCTCCTCATGCCTATGAAAACAACTCACGGATGGTAAGGATTCCAGAGAATGGTAAATGATCGATGGAAAATCATGAACAGTGTTTCAGAACTCGAGGATGGACAGCAGCATAAATCGCAGAGGATGAGCTGTAGTTATCTCCTGTGCACCATTCTGCTGTTTGTTGCCGTTTTACTGGCCGTGACAGTAACCGGGATCATCCTCCTGATGAACCATTACCAGGCTCCCAGCGGCCCCGATGGCCCCCCGCTCATCAGCACCAATCAGGACGAGGGAAACGCCCTGGTGACCATCGAGCGGGGCGATGGCTCCCGCATCAACATCTTCATCGACCCCAACTGTCCCGACTACAACAATAACTTCCTGCGTCTGGAGGGGGTTCAGACCTCACTGCTGCACTCACTCACCGACCACGACACTGATCTGAAATCAGTGAAAGGCCAGGATCGGGCTCTGCTGGTTAAACTGGCTGAGGAGGTGGCCAAACTGTCCGCTCACGCCAGCCAGCTGAAGATGGAGTACAACGCTTTGAGGCAAGGCCAGGGCAACATCGGGCAGGAGCTAAGCACACTGCAGACGGAACAGGGCAGACTCATACAGCTACTGTCAGAAAGCCAGATCAACATGGTGAAAGTGGTGAACTCGGTGAGTGACGCGCTCAGCTCCATGCAGAAGGAAAATGGAAACATCAAGAGCCGTCTTAAGGCAGATCTGCAGAGGGCTCCGGTGCGCAGTGTCCGGCCCAAAGGCTGCGCCGCTGGAGAGGGTTCCAGACCCAGAGACTGCAGTGACATCTATGCCAGCGGGCAAAGAGAGGATGGCATCTACTCGGTGTTCCCCACGCATTACCCAGCAGGCTTCCAGGTcttctgtgacatgactactgatGGAGGCGGGTGGACGgtgATTCAACGCAGAGAAGATGGCTCAGTTAACTTTTTCCGTGACTGGGAAGCCTATCGTGAAGGATTTGGCAAGATAACAGGAGAGCATTGGCTAGGCATGAAACGAATCCATGCACTTACTATTCAAGCCAACTACGAGCTGCGGATTGACCTGGAGGACTTCGAGAACAGCACCTCCTTTGCGCAGTACGGCTCTTTTGGAGTGGGTTTGTTCTCAGTTGACCCAGACGAGGATGGTTACCCACTGAGCATCGCTGACTACTCCGGCACCGCAGGCGACTCGCTGCTCAAACACAACGGTATGAAATTTACCACCAAGGACAAGGACAACGACCACTCGGAGAATAACTGCGCGTCCTTCTACCATGGCGCCTGGTGGTACCGAAACTGCCACACGTCCAACCTGAATGGACAGTACCTGCGCGGCCAGCACACTTCATACGCCGACGGCATCGAGTGGTCGTCCTGGACGGGTTGGCAATACTCGCTGAAGTTCACCGAGATGAAGATCAGACCGACCAAGGAGGAGAATAAATGAGCGAGAACTAGAAAACCCGAGAGGAAGAACTCAAAGATGGCTGTAGGTGTTAGAGACACTCAATGCAGAAACTTTCCAGCAACGACTCTTCTTTCTTTGTCATATTTCTGTTTTCGATCCCTGTTTTCCTATCATCTCGTAGTGTTCGTGCTGACGCCGCTGTTTTTTCTCCTAACACACCTCTGAATATTATTGCAGGTAATGTCAAAAAATGTGCTACTGAGAACAAAAAATAGttgttgtctttaaaaaaaaacataaaaatgacacaaaaaaatCTGTAGCTGTTAAATTTAGCAAGAACGTGTAGCTTTTCataaaaataaagacttttaACTGGTCTCGGACATCTGGCGGAGAGGCAGCTTTGTCTTCTGTTATTTCTGGTTCAGTGATTAATCAATAACTCGTAGTTAAACGTGACAGGGTTGCTATTGGTGTGTCCGGTCACTGCTGTAATATCTGGGAGGTAACTAGGTTTTCCCCGTGTGTCGAATAAATACGTTATTGACCACCAGAGATGCTCAAAGAGAATATGTGTCACGGTGGTGGCTTTTCAGAGTGATGGGCCAATACCGGCACATTTTTCACTCTGACAGGTCAGTCGAAGGAAGGTTTATCAATGGAAAAGCACA

Function

GO:

id name namespace
GO:0007215 glutamate receptor signaling pathway biological_process
GO:0046031 ADP metabolic process biological_process
GO:0009584 detection of visible light biological_process
GO:0006096 glycolytic process biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0097060 synaptic membrane cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098794 postsynapse cellular_component
GO:0030276 clathrin binding molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070863 lncRNA downstream 86710 12342438 ~ 12364741 (-) True XLOC_036249
TCONS_00072403 lncRNA downstream 326077 12029473 ~ 12125374 (-) True XLOC_036247
TCONS_00070858 lncRNA downstream 466142 11955116 ~ 11985309 (-) True XLOC_036246
TCONS_00070845 lncRNA downstream 901178 11547835 ~ 11550273 (-) False XLOC_036242
TCONS_00070839 lncRNA downstream 1251475 11199033 ~ 11199976 (-) True XLOC_036239
TCONS_00072404 lncRNA upstream 17578 12686691 ~ 12710224 (-) True XLOC_036253
TCONS_00072405 lncRNA upstream 176156 12845269 ~ 12847486 (-) True XLOC_036254
TCONS_00072406 lncRNA upstream 633566 13302679 ~ 13306048 (-) True XLOC_036263
TCONS_00070904 lncRNA upstream 997314 13666427 ~ 13678415 (-) False XLOC_036276
TCONS_00072011 lncRNA upstream 1045829 13714942 ~ 13716577 (-) True XLOC_036277
TCONS_00070864 mRNA downstream 18766 12408840 ~ 12432685 (-) False XLOC_036250
TCONS_00070866 mRNA downstream 18842 12423075 ~ 12432609 (-) True XLOC_036250
TCONS_00070865 mRNA downstream 18847 12423064 ~ 12432604 (-) False XLOC_036250
TCONS_00070862 mRNA downstream 48374 12340247 ~ 12403077 (-) False XLOC_036249
TCONS_00070860 mRNA downstream 186930 12134127 ~ 12264521 (-) False XLOC_036248
TCONS_00070872 mRNA upstream 174187 12843300 ~ 12847483 (-) False XLOC_036254
TCONS_00070873 mRNA upstream 184992 12854105 ~ 12867434 (-) False XLOC_036255
TCONS_00070874 mRNA upstream 188001 12857114 ~ 12867128 (-) True XLOC_036255
TCONS_00070875 mRNA upstream 320259 12989372 ~ 13010011 (-) False XLOC_036256
TCONS_00070877 mRNA upstream 332630 13001743 ~ 13029297 (-) False XLOC_036256
TCONS_00070861 other downstream 242091 12183119 ~ 12209360 (-) True XLOC_036248
TCONS_00070844 other downstream 901179 11542904 ~ 11550272 (-) False XLOC_036242
TCONS_00070846 other downstream 902932 11548419 ~ 11548519 (-) True XLOC_036242
TCONS_00070841 other downstream 1221944 11226290 ~ 11229507 (-) True XLOC_036240
TCONS_00070819 other downstream 2011607 10439725 ~ 10439844 (-) True XLOC_036229
TCONS_00070876 other upstream 329139 12998252 ~ 13012827 (-) False XLOC_036256
TCONS_00070885 other upstream 569860 13238973 ~ 13239092 (-) True XLOC_036261
TCONS_00070909 other upstream 1208615 13877728 ~ 13877845 (-) True XLOC_036279
TCONS_00070922 other upstream 1423681 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070936 other upstream 1745240 14414353 ~ 14451783 (-) False XLOC_036294

Expression Profile

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