RNA id: TCONS_00070845


Basic Information

Item Value
RNA id TCONS_00070845
length 997
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_036242
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 11542852 ~ 11550273 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTCACTTCTCAGATGTGTGTGTGGACAGAGGTGAAGCTGCAATGAGCTTCTGGAGCTCAAACACTCCTCCGTGGACCACCTCAAATCTCATCTGCAAGAACCAGCAAAAATATGGAAAACATCCGTAATTTTCAGTTATGGATGGATTAACCTCTGAGAAGGGCCACCGATGAGGACTACTATAGTAAAAGCTGAATATTTTACTCCTTAAGGCTGCGAAAGGTACATTTTTACAACTTGCAAAAAGTCGATGTTGGAAAGCACATAATCGGTTAAACTGTTCAAATGCCATGCCTTGACGAGAAGAAAGGAGCCATTTTAACTGCTTCACAGTCCATTATTACTTTTGGTACGCGCTAGGCCAGACTCAAACTCGTACCGTGAGTAATAATGCACTGTGGCAGTGGGTTTATCTGCGTGGACAAACTCAAGACAGGTTTGGATGCAGATCAGTGTTATCGATggataaaataacactttttttggTATAAAAAGAACACAAGCACTTTGTTTTGGCACATGAGACGGCATTTGACAAATGGACCCACTGGCATCTGACTTGTTTAATTTTAGAGGTTAAAGGAAATAAATTTGATACAAATAAAATCTGGAGGAAATAAAGGGCATGTTACATTAAATATCACCTCTAGggttttactattatttaaaactgtatgtataaacactgttaaatgaaatgtttaatgaagtgttgATGGTTGAATTTTTTGAGGGGTCTTAGGTTTAAGATATTTATGGATGTCTGCCAGTCTGTTGTTTACTTTGTGTTAtcatttatttgcttttgtaataaaaaaaaaagttattgtgtGAAAAAAACTGTTGCAAGTAAACAAGAAAATGGTTGTGTAAATGATGtttactcttttatttttttacactaaatAAAACTGATTGATAATCAATGCCTTAGAGTATTTTcttatgaaaatgttttaaacactgtacacttcaCTACTTTATTGGAATAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070839 lncRNA downstream 347859 11199033 ~ 11199976 (-) True XLOC_036239
TCONS_00072008 lncRNA downstream 470605 11067166 ~ 11077230 (-) True XLOC_036234
TCONS_00072402 lncRNA downstream 481264 11057877 ~ 11066571 (-) False XLOC_036234
TCONS_00070821 lncRNA downstream 623807 10915833 ~ 10924028 (-) True XLOC_036230
TCONS_00070818 lncRNA downstream 1220779 10323325 ~ 10327056 (-) True XLOC_036228
TCONS_00070858 lncRNA upstream 404843 11955116 ~ 11985309 (-) True XLOC_036246
TCONS_00072403 lncRNA upstream 479200 12029473 ~ 12125374 (-) True XLOC_036247
TCONS_00070863 lncRNA upstream 792165 12342438 ~ 12364741 (-) True XLOC_036249
TCONS_00072009 lncRNA upstream 901178 12451451 ~ 12669113 (-) False XLOC_036251
TCONS_00072010 lncRNA upstream 901813 12452086 ~ 12669412 (-) False XLOC_036251
TCONS_00070843 mRNA downstream 1660 11542852 ~ 11546175 (-) False XLOC_036242
TCONS_00070842 mRNA downstream 223692 11234168 ~ 11324143 (-) True XLOC_036241
TCONS_00070840 mRNA downstream 318312 11204059 ~ 11229523 (-) False XLOC_036240
TCONS_00070837 mRNA downstream 345335 11173794 ~ 11202500 (-) False XLOC_036239
TCONS_00070838 mRNA downstream 345457 11173823 ~ 11202378 (-) False XLOC_036239
TCONS_00070847 mRNA upstream 28045 11578318 ~ 11640240 (-) True XLOC_036243
TCONS_00070848 mRNA upstream 196210 11746483 ~ 11770092 (-) True XLOC_036244
TCONS_00070849 mRNA upstream 229274 11779547 ~ 11832773 (-) False XLOC_036245
TCONS_00070851 mRNA upstream 229440 11779713 ~ 11832771 (-) False XLOC_036245
TCONS_00070850 mRNA upstream 229440 11779713 ~ 11832771 (-) False XLOC_036245
TCONS_00070841 other downstream 318328 11226290 ~ 11229507 (-) True XLOC_036240
TCONS_00070819 other downstream 1107991 10439725 ~ 10439844 (-) True XLOC_036229
TCONS_00070817 other downstream 1495702 10052019 ~ 10052133 (-) True XLOC_036227
TCONS_00070809 other downstream 2956047 8591671 ~ 8591788 (-) True XLOC_036217
TCONS_00070808 other downstream 3027662 8520042 ~ 8520173 (-) True XLOC_036216
TCONS_00070861 other upstream 632846 12183119 ~ 12209360 (-) True XLOC_036248
TCONS_00070868 other upstream 901813 12452086 ~ 12604702 (-) False XLOC_036251
TCONS_00070869 other upstream 915026 12465299 ~ 12668565 (-) False XLOC_036251
TCONS_00070870 other upstream 971079 12521352 ~ 12669091 (-) True XLOC_036251
TCONS_00070871 other upstream 1062499 12612772 ~ 12612888 (-) True XLOC_036252

Expression Profile

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