Fish Transcriptome and Expression Database

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model fish

XLOC_036252 (CU639468.2)

Basic Information

Item	Value
gene id	XLOC_036252
gene name	CU639468.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007119.7
NCBI id	CM002892.2
chromosome length	54304671
location	12612772 ~ 12612888 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070871
ATTCACAGCCATattaccctgcagcccaagaccagttacttgctgaagctaagcagggctgagcctggtcagtacctggatgggagacaacATAAGGAAACTAGGTTGCGTTGAAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107316

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00070871	True	117	rRNA	0.50	1	12612772	12612888

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_036250	traf1	coding	downstream	180087	12408840 ~ 12432685 (-)
XLOC_036249	phf19	coding	downstream	209695	12340247 ~ 12403077 (-)
XLOC_036248	dab2ipa	coding	downstream	348251	12134127 ~ 12264521 (-)
XLOC_036247	NA	coding	downstream	487398	12029473 ~ 12125374 (-)
XLOC_036246	med27	coding	downstream	624707	11884671 ~ 11988065 (-)
XLOC_036253	NA	coding	upstream	73803	12686691 ~ 12710224 (-)
XLOC_036254	si:dkey-104n9.1	coding	upstream	230412	12843300 ~ 12847486 (-)
XLOC_036255	slc2a6	coding	upstream	241217	12854105 ~ 12867434 (-)
XLOC_036256	dennd2da	coding	upstream	376484	12989372 ~ 13029297 (-)
XLOC_036257	si:dkey-208b23.5	coding	upstream	423333	13036221 ~ 13046089 (-)
XLOC_036229	FO834835.1	non-coding	downstream	2172928	10439725 ~ 10439844 (-)
XLOC_036228	NA	non-coding	downstream	2285716	10323325 ~ 10327056 (-)
XLOC_036227	CT573497.2	non-coding	downstream	2560639	10052019 ~ 10052133 (-)
XLOC_036222	NA	non-coding	downstream	3580443	9029054 ~ 9032329 (-)
XLOC_036261	BX119975.1	non-coding	upstream	626085	13238973 ~ 13239092 (-)
XLOC_036263	NA	non-coding	upstream	689791	13302679 ~ 13306048 (-)
XLOC_036277	NA	non-coding	upstream	1102054	13714942 ~ 13716577 (-)
XLOC_036279	CT025854.2	non-coding	upstream	1264840	13877728 ~ 13877845 (-)

Expression

Co-expression Network