XLOC_036249 (phf19)


Basic Information

Item Value
gene id XLOC_036249
gene name phf19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 12340247 ~ 12403077 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070862
ACTTCCTGTACAcggacgatgatgatgatgatgatcggGTTATGTTAATTACATAAGCAAAACGTAAATGATTCGCGGGAAAAGGTGAAAAAATGGCGACGCGCACTGCCTGCATTTCTGCGTCGCTTATGCTGTAAAAAACACCCGAAAGTCTCTCAAACATCGCGAATGGGACATCGTGCTGCCACAGGAGGGGATATCTGCACTTTTGGCGCGTTTTACCCGCGGGACTGGAGAGAAATCAAAGCGGAACTAAAGGTGTGTGTAACGTCAGCATGTTGGAGTCGGCCTGTCGGGACGGATATCTGACAGCCGGGTCGGAATCACTAGAACCCAAGCACCTTCATCCTAATATAGAGAAAAGCATCTGTGACCAGGAGACCAGCTTGACTGTGGGCCAGTATGTGCTCTGCTGTTGGTCCGATGGCCTTTATTACCTGGGGAAAATCCAAAGAGTGAGCACCTCAAAACAGAGCTGCTTTGTGTCGTTTGAAGACAACTCCAAGTTCTGGGTGCTTTGGAAAGACATACAACATGCTGGAATCCCAGGGGAAGAACCCAAATGCTCAGTGTGTTCTGACATGTCTCTGGATCCTGGTAATGAAATTCTTATCTGCGGAAAGTGTGGAGTAGGCTTTCATCAGCTCTGCCACTTGCCCACGGTGGAGAGCTCAGCTGACCCATCGCCTTGGTTCTGCAGAAGGTGCATTTTTGCCTTGGCTGTGAGAAAAGGGGGAGCTTTGAAGAAAGGGCAGCTGGCCAAAGATCTGCAGGCCATGAAGCAGGTGCTGACCTATAATCCAGAGGAGCTCGAGTGGGACTCTTTGCACCGCACAAACCATCAGCAGTGCTATTGCTATTGCGGAGGACCTGGGTGGTATCTAAAAATGCTGCAATGCTTTCGCTGTGAGCAGTGGTTTCATGAAGCGTGTACGCAGTGCCTACAGGACTCCATGATGTTTGGAGATAGGTTTTACTTGTTCATTTGTGCGGTGTGCAATAAAGGAGTGGAATACATCAAGCGGCTGGCTCTCAGATGGGTGGATGTGGTCCATCTTGCCCTCTACAACCTGGGAGTCCAAAGTAAGAAGAAATACTTTGAACTGGAGGAGATCGTAGCATTCATCAACAACAACTGGGATCGTTTCCAGATGGGCAAGCTCTCCAATACCCCTCTGCCTGAGCGAGGCCAGTTAATTCTTGATGCTCTCAACAACTATAAAAGCAAgttTCTCTGCGGCAAGGAGATCAAGAAGAGGAAATGCATTTTCCGACTAAGAACGAGGGTCCCTCCTAACCCTCCATCTAAGTTGTACCCAGAGAAGGCCCAAAAAAGTGATGCACATAGGGGACGCAAAAAAGCAGTCAGCAGAAGCAGTAACTCTGATCCTGCAGAGAAGCGGAGGAAGAAGAGGGCCAAGTGGCTGCTGGAAGATGCTATTCCTAACAATGACCTCACCTCCAGCTGGAGCACCAACCATCATATGGCCAACATCTTCGACTTCACGCTGGACGAGCTTCAGAGCTTGAAGAGTACCAGCTCAGGACAGACATTCAGTTTGGACCAGGACTCGACTGATGCGGCCAGCACTTCTGGTTCTGCCACTACCAGCGTCTCCTATGACTTCAGGAAAAATGTAGGCAGTCGGAAGAGGAAGTTGCCCACCTCTAACTACAATTTACTGGCCACAAAACGAGAGCTGGTGGAGCGAGAGCCGAGCCCCATCAACATGCCTGGAGAGGAGAGAAATGTCCTGATGGAAAACGGCATCGACAGCCACACGTTTGAGAGCATCAGCGAGGACGACTCTTCGCTGTTGCACCTCAAGTCTTCCATCACCAGTTATTTCGGAGCGGCTGGTCGGCTCACCTGCGGAGAGAAGTATCAGGTTCTGGCTCGCAGGATCACACCTGAAGGAAAGGTGCAGTATTTGGTGGAGTGGGAAGGAACTACACCTTACTGAATGTCACAGAACGGAGGTGTGGAGCAGATGTGCCGCGTCACACATAGTGCTTATACTTGCTTCGCTTTTTTTCAAAGTCATAGTTCAGAGTACTAGTTTTGTTTACATCATTTTCCACATATCACatatagtgttttttaaatataagtttATCTCATCTGCGATGGTAAAATAAATTTTTCTTGAAGTCAGTGTCCTTTTAGGACACTTTAAAATTCACAAACCGGATTCAGTGTAGTAACAAATACTAACCGTACGCAGTATGACAGCTGGTTTCATTATTAGATAGGACATAATGGACAGTATTATTCAATGTGAAGTCATTTCATTAGTTTTCAGATATAAAGAGAGTTCCCCCCCATGAATTCCAGGATTTCAAAGTTCATATCATTAAGTTTTTAGTTTAATGGAATAGTTCACcaagaaaataaaatgtgttttataaattACATATGGCCTTTTtgtataaaacaaacacaaactgatCAAACTGAACCGCATCCTGGCTCTTCTCAGATTTAGAATAGAAGTGAATGGTGCCCGAGTTTTTAAAGCTCCAAAAACCACATTCATCCATCATATAAGTATTCCATACAACTAAAGTAAGTTAAGGAATGCCTTCTGAAAAATATCTATAGTATATTTAACACTATATAAACTACAATAACTGCTGTATGCATATTCAAGTTGAGTTACAGTATACGAAAATAGGATCCAAACTAATTTGGCTGGGCAAAAAGTTTTATATTCTGATCCTTTACGTCAAACTATTCTTTAAGTCATTTCATTTTTAGACTTTTAATCCCTTATCATTGTTTTGATTTGCTCTAATATCTgtgcttcagtttttttttttctttgacttaCATTGTAACTTGTAACTTGTATCATTGTAACAAGAATCTATTGAATCACTTTAGGATGCAGTCATAAAAACTTTGGAATCATATGGATTACTTTAATGAGGGATGAATGCTGCGTTTTGTAGGTTCAAAAACACAAGCACTATTCACTTCCATTATAAAGATTAGAAGAGGCAGCGTACTATTTATCATAACTCTCCTTTTTTTGGATGAAGTAATTAcgaattttgggtgaactattcttttaaagaAACATGGAGCACTTGTTTTTGAAAGTAGTTTACTTAAAGTAATTTGTCATTTCATTCAGTATTTCGGGAGAAGGAATATTTATAGCGATTTGTACACATTTTGTTAAGATTAACAATACAGCGGTACTTTTTAGCCATGTTAAAAGAATTAGTCAGCACTTTCGTTTGTCCTCTTCCACcatcattttttaatttgttctAGGTGATTATATAACCAAAGTGATACAAATACTATTTTGAGAAGattgttttctattttatatGCTTTTGTATGTTCAGATTGGATAAGCAGAAGGAAACTAATCGTGGAAAGTGATCATTTGTGTTTCATTTGCAATAGATTTTAGGCTCTTTTCAACATTTGACCACAGATGACCGTCAAATTTATGTTTTCATAGAAGATCTCCAAAGATTGCTGTTATATTTGAGATGGATTTGGAAGTGGATAATGGCCACTTATGTGACGATTTGAAAGCTATGTGAGGTTCTAAAGCCGTCAGATTTTGTGATTTGACTTGATTAGTTTTATAGTAtacaacattataaatatactttattatTTACATGTATATAATTGGATATAAGATTAGCCCCATTTTGTTATTGCACTATTAACATGTTTATCAGCTATGCAAGCTATTATTGGATAAATTGACCTATATTTTCTAATTGATTTTAAAGGGAAAAAATTTATACAAAGATATTTCTAagatttactttttacttttaaaacatttccccAATGGAAAAAGCATTTGTAAAACTGAATGGAAATTGCGActgttttattaacaaaatacaatgtTTGTTGTATTGAT
>TCONS_00070863
GCTAATAATGCCATGAACAACTTCAGACATGCCATTAGACTGAGTGTAACAGCCATGACGGCTCTGATCATCATAATCAAAGCTGTGATTATCGGCTTCATCCTAATGACAAAGAGCTGATGCAGCATAATGAATTTAACATTAGTATTTCATGCTTTGTTTGTGATGTCATTGTAGAATGACCTCACCTCCAGCTGGAGCACCAACCATCATATGGCCAACATCTTCGACTTCACGCTGGACGAGCTTCAGAGCTTGAAGAGTACCAGCTCAGGACAGACATTCAGTTTGGACCAGGACTCGACTGATGCGGCCAGCACTTCTGGTTCTGCCACTACCAGCGTCTCCTATGACTTCAGGAAAAATGTAGGCAGTCGGAAGAGGAAGTTGCCCACCTCTAACTACAATTTACTGGCCACAAAACGAGAGCTGGT

Function

symbol description
phf19 Predicted to enable DNA binding activity; chromatin binding activity; and methylated histone binding activity. Predicted to be involved in chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human PHF19 (PHD finger protein 19).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081105-128 Predicted to enable DNA binding activity; chromatin binding activity; and methylated histone binding activity. Predicted to be involved in chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human PHF19 (PHD finger protein 19).

Ensembl:

ensembl_id ENSDARG00000078050

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070862 False 3896 mRNA 0.40 15 12340247 12403077
TCONS_00070863 True 434 lncRNA 0.46 3 12342438 12364741

Neighbor

gene id symbol gene type direction distance location
XLOC_036248 dab2ipa coding downstream 75726 12134127 ~ 12264521 (-)
XLOC_036247 NA coding downstream 214873 12029473 ~ 12125374 (-)
XLOC_036246 med27 coding downstream 352182 11884671 ~ 11988065 (-)
XLOC_036245 rapgef1a coding downstream 504640 11779547 ~ 11835607 (-)
XLOC_036244 anapc7 coding downstream 570155 11746483 ~ 11770092 (-)
XLOC_036250 traf1 coding upstream 5763 12408840 ~ 12432685 (-)
XLOC_036251 NA coding upstream 48374 12451451 ~ 12669412 (-)
XLOC_036252 CU639468.2 coding upstream 209695 12612772 ~ 12612888 (-)
XLOC_036253 NA coding upstream 283614 12686691 ~ 12710224 (-)
XLOC_036254 si:dkey-104n9.1 coding upstream 440223 12843300 ~ 12847486 (-)
XLOC_036229 FO834835.1 non-coding downstream 1900403 10439725 ~ 10439844 (-)
XLOC_036228 NA non-coding downstream 2013191 10323325 ~ 10327056 (-)
XLOC_036227 CT573497.2 non-coding downstream 2288114 10052019 ~ 10052133 (-)
XLOC_036222 NA non-coding downstream 3307918 9029054 ~ 9032329 (-)
XLOC_036261 BX119975.1 non-coding upstream 835896 13238973 ~ 13239092 (-)
XLOC_036263 NA non-coding upstream 899602 13302679 ~ 13306048 (-)

Expression


Co-expression Network