RNA id: TCONS_00070862


Basic Information

Item Value
RNA id TCONS_00070862
length 3896
RNA type mRNA
GC content 0.40
exon number 15
gene id XLOC_036249
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 12340247 ~ 12403077 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCCTGTACAcggacgatgatgatgatgatgatcggGTTATGTTAATTACATAAGCAAAACGTAAATGATTCGCGGGAAAAGGTGAAAAAATGGCGACGCGCACTGCCTGCATTTCTGCGTCGCTTATGCTGTAAAAAACACCCGAAAGTCTCTCAAACATCGCGAATGGGACATCGTGCTGCCACAGGAGGGGATATCTGCACTTTTGGCGCGTTTTACCCGCGGGACTGGAGAGAAATCAAAGCGGAACTAAAGGTGTGTGTAACGTCAGCATGTTGGAGTCGGCCTGTCGGGACGGATATCTGACAGCCGGGTCGGAATCACTAGAACCCAAGCACCTTCATCCTAATATAGAGAAAAGCATCTGTGACCAGGAGACCAGCTTGACTGTGGGCCAGTATGTGCTCTGCTGTTGGTCCGATGGCCTTTATTACCTGGGGAAAATCCAAAGAGTGAGCACCTCAAAACAGAGCTGCTTTGTGTCGTTTGAAGACAACTCCAAGTTCTGGGTGCTTTGGAAAGACATACAACATGCTGGAATCCCAGGGGAAGAACCCAAATGCTCAGTGTGTTCTGACATGTCTCTGGATCCTGGTAATGAAATTCTTATCTGCGGAAAGTGTGGAGTAGGCTTTCATCAGCTCTGCCACTTGCCCACGGTGGAGAGCTCAGCTGACCCATCGCCTTGGTTCTGCAGAAGGTGCATTTTTGCCTTGGCTGTGAGAAAAGGGGGAGCTTTGAAGAAAGGGCAGCTGGCCAAAGATCTGCAGGCCATGAAGCAGGTGCTGACCTATAATCCAGAGGAGCTCGAGTGGGACTCTTTGCACCGCACAAACCATCAGCAGTGCTATTGCTATTGCGGAGGACCTGGGTGGTATCTAAAAATGCTGCAATGCTTTCGCTGTGAGCAGTGGTTTCATGAAGCGTGTACGCAGTGCCTACAGGACTCCATGATGTTTGGAGATAGGTTTTACTTGTTCATTTGTGCGGTGTGCAATAAAGGAGTGGAATACATCAAGCGGCTGGCTCTCAGATGGGTGGATGTGGTCCATCTTGCCCTCTACAACCTGGGAGTCCAAAGTAAGAAGAAATACTTTGAACTGGAGGAGATCGTAGCATTCATCAACAACAACTGGGATCGTTTCCAGATGGGCAAGCTCTCCAATACCCCTCTGCCTGAGCGAGGCCAGTTAATTCTTGATGCTCTCAACAACTATAAAAGCAAgttTCTCTGCGGCAAGGAGATCAAGAAGAGGAAATGCATTTTCCGACTAAGAACGAGGGTCCCTCCTAACCCTCCATCTAAGTTGTACCCAGAGAAGGCCCAAAAAAGTGATGCACATAGGGGACGCAAAAAAGCAGTCAGCAGAAGCAGTAACTCTGATCCTGCAGAGAAGCGGAGGAAGAAGAGGGCCAAGTGGCTGCTGGAAGATGCTATTCCTAACAATGACCTCACCTCCAGCTGGAGCACCAACCATCATATGGCCAACATCTTCGACTTCACGCTGGACGAGCTTCAGAGCTTGAAGAGTACCAGCTCAGGACAGACATTCAGTTTGGACCAGGACTCGACTGATGCGGCCAGCACTTCTGGTTCTGCCACTACCAGCGTCTCCTATGACTTCAGGAAAAATGTAGGCAGTCGGAAGAGGAAGTTGCCCACCTCTAACTACAATTTACTGGCCACAAAACGAGAGCTGGTGGAGCGAGAGCCGAGCCCCATCAACATGCCTGGAGAGGAGAGAAATGTCCTGATGGAAAACGGCATCGACAGCCACACGTTTGAGAGCATCAGCGAGGACGACTCTTCGCTGTTGCACCTCAAGTCTTCCATCACCAGTTATTTCGGAGCGGCTGGTCGGCTCACCTGCGGAGAGAAGTATCAGGTTCTGGCTCGCAGGATCACACCTGAAGGAAAGGTGCAGTATTTGGTGGAGTGGGAAGGAACTACACCTTACTGAATGTCACAGAACGGAGGTGTGGAGCAGATGTGCCGCGTCACACATAGTGCTTATACTTGCTTCGCTTTTTTTCAAAGTCATAGTTCAGAGTACTAGTTTTGTTTACATCATTTTCCACATATCACatatagtgttttttaaatataagtttATCTCATCTGCGATGGTAAAATAAATTTTTCTTGAAGTCAGTGTCCTTTTAGGACACTTTAAAATTCACAAACCGGATTCAGTGTAGTAACAAATACTAACCGTACGCAGTATGACAGCTGGTTTCATTATTAGATAGGACATAATGGACAGTATTATTCAATGTGAAGTCATTTCATTAGTTTTCAGATATAAAGAGAGTTCCCCCCCATGAATTCCAGGATTTCAAAGTTCATATCATTAAGTTTTTAGTTTAATGGAATAGTTCACcaagaaaataaaatgtgttttataaattACATATGGCCTTTTtgtataaaacaaacacaaactgatCAAACTGAACCGCATCCTGGCTCTTCTCAGATTTAGAATAGAAGTGAATGGTGCCCGAGTTTTTAAAGCTCCAAAAACCACATTCATCCATCATATAAGTATTCCATACAACTAAAGTAAGTTAAGGAATGCCTTCTGAAAAATATCTATAGTATATTTAACACTATATAAACTACAATAACTGCTGTATGCATATTCAAGTTGAGTTACAGTATACGAAAATAGGATCCAAACTAATTTGGCTGGGCAAAAAGTTTTATATTCTGATCCTTTACGTCAAACTATTCTTTAAGTCATTTCATTTTTAGACTTTTAATCCCTTATCATTGTTTTGATTTGCTCTAATATCTgtgcttcagtttttttttttctttgacttaCATTGTAACTTGTAACTTGTATCATTGTAACAAGAATCTATTGAATCACTTTAGGATGCAGTCATAAAAACTTTGGAATCATATGGATTACTTTAATGAGGGATGAATGCTGCGTTTTGTAGGTTCAAAAACACAAGCACTATTCACTTCCATTATAAAGATTAGAAGAGGCAGCGTACTATTTATCATAACTCTCCTTTTTTTGGATGAAGTAATTAcgaattttgggtgaactattcttttaaagaAACATGGAGCACTTGTTTTTGAAAGTAGTTTACTTAAAGTAATTTGTCATTTCATTCAGTATTTCGGGAGAAGGAATATTTATAGCGATTTGTACACATTTTGTTAAGATTAACAATACAGCGGTACTTTTTAGCCATGTTAAAAGAATTAGTCAGCACTTTCGTTTGTCCTCTTCCACcatcattttttaatttgttctAGGTGATTATATAACCAAAGTGATACAAATACTATTTTGAGAAGattgttttctattttatatGCTTTTGTATGTTCAGATTGGATAAGCAGAAGGAAACTAATCGTGGAAAGTGATCATTTGTGTTTCATTTGCAATAGATTTTAGGCTCTTTTCAACATTTGACCACAGATGACCGTCAAATTTATGTTTTCATAGAAGATCTCCAAAGATTGCTGTTATATTTGAGATGGATTTGGAAGTGGATAATGGCCACTTATGTGACGATTTGAAAGCTATGTGAGGTTCTAAAGCCGTCAGATTTTGTGATTTGACTTGATTAGTTTTATAGTAtacaacattataaatatactttattatTTACATGTATATAATTGGATATAAGATTAGCCCCATTTTGTTATTGCACTATTAACATGTTTATCAGCTATGCAAGCTATTATTGGATAAATTGACCTATATTTTCTAATTGATTTTAAAGGGAAAAAATTTATACAAAGATATTTCTAagatttactttttacttttaaaacatttccccAATGGAAAAAGCATTTGTAAAACTGAATGGAAATTGCGActgttttattaacaaaatacaatgtTTGTTGTATTGAT

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-081105-128 Predicted to enable DNA binding activity; chromatin binding activity; and methylated histone binding activity. Predicted to be involved in chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human PHF19 (PHD finger protein 19).

Ensembl:

ensembl_id ENSDART00000142150

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072403 lncRNA downstream 214873 12029473 ~ 12125374 (-) True XLOC_036247
TCONS_00070858 lncRNA downstream 354938 11955116 ~ 11985309 (-) True XLOC_036246
TCONS_00070845 lncRNA downstream 789974 11547835 ~ 11550273 (-) False XLOC_036242
TCONS_00070839 lncRNA downstream 1140271 11199033 ~ 11199976 (-) True XLOC_036239
TCONS_00072008 lncRNA downstream 1263017 11067166 ~ 11077230 (-) True XLOC_036234
TCONS_00072009 lncRNA upstream 48374 12451451 ~ 12669113 (-) False XLOC_036251
TCONS_00072010 lncRNA upstream 49009 12452086 ~ 12669412 (-) False XLOC_036251
TCONS_00072404 lncRNA upstream 283614 12686691 ~ 12710224 (-) True XLOC_036253
TCONS_00072405 lncRNA upstream 442192 12845269 ~ 12847486 (-) True XLOC_036254
TCONS_00072406 lncRNA upstream 899602 13302679 ~ 13306048 (-) True XLOC_036263
TCONS_00070860 mRNA downstream 75726 12134127 ~ 12264521 (-) False XLOC_036248
TCONS_00070859 mRNA downstream 75761 12134127 ~ 12264486 (-) False XLOC_036248
TCONS_00070857 mRNA downstream 352182 11884671 ~ 11988065 (-) False XLOC_036246
TCONS_00070856 mRNA downstream 504640 11779713 ~ 11835607 (-) True XLOC_036245
TCONS_00070855 mRNA downstream 505648 11779713 ~ 11834599 (-) False XLOC_036245
TCONS_00070864 mRNA upstream 5763 12408840 ~ 12432685 (-) False XLOC_036250
TCONS_00070865 mRNA upstream 19987 12423064 ~ 12432604 (-) False XLOC_036250
TCONS_00070866 mRNA upstream 19998 12423075 ~ 12432609 (-) True XLOC_036250
TCONS_00070867 mRNA upstream 48662 12451739 ~ 12468744 (-) False XLOC_036251
TCONS_00070872 mRNA upstream 440223 12843300 ~ 12847483 (-) False XLOC_036254
TCONS_00070861 other downstream 130887 12183119 ~ 12209360 (-) True XLOC_036248
TCONS_00070844 other downstream 789975 11542904 ~ 11550272 (-) False XLOC_036242
TCONS_00070846 other downstream 791728 11548419 ~ 11548519 (-) True XLOC_036242
TCONS_00070841 other downstream 1110740 11226290 ~ 11229507 (-) True XLOC_036240
TCONS_00070819 other downstream 1900403 10439725 ~ 10439844 (-) True XLOC_036229
TCONS_00070868 other upstream 49009 12452086 ~ 12604702 (-) False XLOC_036251
TCONS_00070869 other upstream 62222 12465299 ~ 12668565 (-) False XLOC_036251
TCONS_00070870 other upstream 118275 12521352 ~ 12669091 (-) True XLOC_036251
TCONS_00070871 other upstream 209695 12612772 ~ 12612888 (-) True XLOC_036252
TCONS_00070876 other upstream 595175 12998252 ~ 13012827 (-) False XLOC_036256

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_06978661_07003520.mRNA True 3187 mRNA 0.42 14 CI01000010 6977599 ~ 7003929 (+)
bowfin (Amia calva) AMCG00019952 True 1884 mRNA 0.53 15 CM030127.1 4106997 ~ 4133823 (-)