RNA id: TCONS_00072405


Basic Information

Item Value
RNA id TCONS_00072405
length 385
lncRNA type sense_over
GC content 0.42
exon number 3
gene id XLOC_036254
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 12843300 ~ 12847486 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cAGCTTCCCATGGTGGATGTGGCGGTGTTCTTGTTCTTTCTTCTAAACAGTTTGATTCTTTTGATCTTGGATCACAGTCAGTTGAAAGGCTCTTTGAAACGATCTGAACTGCTCACCAGGCCCCAGAGGTTTTTCCTTCAAATGGATTTTTTTGCCAACTTCATTTTTGGCCTCATGTGGTTGGTTTTTCCAGGATGGCTTCTTGGGTCACAGATACATGGATATGAGGATAATCTTCATCTCACCCGTGCATTTGGAGCCATGATGATTGGAGACAGTTTTGCCTCTTTTATTACTCAAAAACAAATGGGAACCAATGAGGTGTCTGTCTTCACCAGCCGAGCTGTGaaaaaaagaaactgatgAAGGTTTAgaacaacttgag

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072404 lncRNA downstream 135045 12686691 ~ 12710224 (-) True XLOC_036253
TCONS_00072010 lncRNA downstream 175857 12452086 ~ 12669412 (-) False XLOC_036251
TCONS_00072009 lncRNA downstream 176156 12451451 ~ 12669113 (-) False XLOC_036251
TCONS_00070863 lncRNA downstream 480528 12342438 ~ 12364741 (-) True XLOC_036249
TCONS_00072403 lncRNA downstream 719895 12029473 ~ 12125374 (-) True XLOC_036247
TCONS_00072406 lncRNA upstream 455193 13302679 ~ 13306048 (-) True XLOC_036263
TCONS_00070904 lncRNA upstream 818941 13666427 ~ 13678415 (-) False XLOC_036276
TCONS_00072011 lncRNA upstream 867456 13714942 ~ 13716577 (-) True XLOC_036277
TCONS_00070911 lncRNA upstream 1123404 13970890 ~ 13972558 (-) True XLOC_036280
TCONS_00070916 lncRNA upstream 1182435 14029921 ~ 14043884 (-) False XLOC_036283
TCONS_00070867 mRNA downstream 376525 12451739 ~ 12468744 (-) False XLOC_036251
TCONS_00070864 mRNA downstream 412584 12408840 ~ 12432685 (-) False XLOC_036250
TCONS_00070866 mRNA downstream 412660 12423075 ~ 12432609 (-) True XLOC_036250
TCONS_00070865 mRNA downstream 412665 12423064 ~ 12432604 (-) False XLOC_036250
TCONS_00070862 mRNA downstream 442192 12340247 ~ 12403077 (-) False XLOC_036249
TCONS_00070873 mRNA upstream 6619 12854105 ~ 12867434 (-) False XLOC_036255
TCONS_00070874 mRNA upstream 9628 12857114 ~ 12867128 (-) True XLOC_036255
TCONS_00070875 mRNA upstream 141886 12989372 ~ 13010011 (-) False XLOC_036256
TCONS_00070877 mRNA upstream 154257 13001743 ~ 13029297 (-) False XLOC_036256
TCONS_00070878 mRNA upstream 156529 13004015 ~ 13013123 (-) True XLOC_036256
TCONS_00070870 other downstream 176178 12521352 ~ 12669091 (-) True XLOC_036251
TCONS_00070869 other downstream 176704 12465299 ~ 12668565 (-) False XLOC_036251
TCONS_00070871 other downstream 232381 12612772 ~ 12612888 (-) True XLOC_036252
TCONS_00070868 other downstream 240567 12452086 ~ 12604702 (-) False XLOC_036251
TCONS_00070861 other downstream 635909 12183119 ~ 12209360 (-) True XLOC_036248
TCONS_00070876 other upstream 150766 12998252 ~ 13012827 (-) False XLOC_036256
TCONS_00070885 other upstream 391487 13238973 ~ 13239092 (-) True XLOC_036261
TCONS_00070909 other upstream 1030242 13877728 ~ 13877845 (-) True XLOC_036279
TCONS_00070922 other upstream 1245308 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070936 other upstream 1566867 14414353 ~ 14451783 (-) False XLOC_036294

Expression Profile

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