RNA id: CI01000010_06146390_06152584.mRNA



Basic Information


Item Value
RNA id CI01000010_06146390_06152584.mRNA
length 1483
RNA type mRNA
GC content 0.48
exon number 4
gene id CI01000010_06146390_06152584
representative True

Chromosome Information


Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6146309 ~ 6152735 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATAAAAACTCATCAGACTGCAATAATATGAAAGATTTATTCAACCAATCCCACAGGTTCAAACTCTTCTGTGATTCAGAATGTCCTGCATGGAGAACATTGTTGTTTACATTCCCAAAGGAACGTGTGTCAAAAACATCCCTGTGCAGTCCCTGTCCAGCTCCACGGCCAGGAAGATCCGTGTCGCTCTGTCTCAACATGAATCAGAGAAACAGATGCCGCAGACAGTGACGTGGATCTGTCCGGTTGAGCTACGGGAAAAAGAAGTGGCCGTGGGCAAGGACAGCAGAGAAACACTTCCCCACAGGCCGCTGGTCACCAAAATAACTCCAGGCCAGTTTTTGCTGCCTGTTGTGAGTTCCAGCATCACTGCCTTTAAGGTCTTAAAAGCGATTTTAAAAACGCATAAGCCTAAAATACAGTTTTCAGGGCAGGAGATTGAAGCGGCCTCTCAGCCCAGCGTCAGGGATTCAGTTGAGCGAAATGCCATCATTGTGTTTAATGGCCAGATCTTCCTCTCAGTGAGGAAGTCACGTTGCAGGCAAGTGAGACTGCAAAACTCTCCCTCAGCACCTTCAGGTGTGTGTCCGGTTTCTCCCAGTCAACAGCACCAGATAAACACTGCATCTAGTTGTCAGGCACAACCACTCCCGGAGACTTCACCCAGATCACAACAGAGCAAGAAAAGTGAGGCACCCTCAGAGTCCAGGGCAGCGAGTAGCCCACCTAAACCTCCTGAGGATCTGGAGTCCATTCAGGAGCCCAACATCCTCCAGCAGTCCCAAATCATCCACTCATCATCTACCGTCTCACCTAGTTGTCAGGCACAACCACTCCCAGACACTTCACCCAGATCACAACAGAGCAAGACTCGGGATGGTCAGGCTCCAGTTACAGATCTTGACATTATCCCACACATTTCACCAAAATTGCACGAAGTCTCTGAAGAAATGCCTGAGCAATGCTGTTTGGGCAAAGAGTGTCAAAAGGAAGGTGAGGCAGCCTCAGAGTCCAGGTCAGTGAGTAGCCCACCCAAACCTCCTGAGGATCTGGAGTCCATTCAGGAGCCTAACATCCTCCAGCAATCCCAGATCATCCATGCATCATCTACCGTCTCAGACCAGCCCGAAGCAGCAGGTGGAGAAAGAGAGATGAACGAGGATGACAATGAGCGTTTAGAGGCCGCTTTGCTCCCCAGAGCTGAGAGCTTTCTTGCATTTGATTTTGAACAGTTGGCCCATGAGGAGAAAATCAACAACCTACGAGCTCGGCTGAGAAAGAAGGAAGCCGCCCTCAGCACCTTTAATACAAAGCCGACGGATCAGATTTAGAGGATCAGACTTTGCCAAAGATGTCTGTTCAAGCAGTGTAAAAGTTCTTCATGCATAATTTCATTTGAGCAGCAGAAGAAATGTCTAAAACTTTGGTTAGGTTCATTAATTTAATTGTTCATTATTTGATAGCACAAATATTGTCATTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72119 lncRNA upstream 40623 6105372 ~ 6105686 (+) True G63318
TU72128 lncRNA upstream 44951 6099418 ~ 6101358 (+) True CI01000010_06093805_06101291
TU72134 lncRNA upstream 57132 6088239 ~ 6089177 (+) True G63333
TU72262 lncRNA upstream 262658 5882768 ~ 5883651 (+) True G63443
TU72261 lncRNA upstream 264709 5881195 ~ 5881600 (+) True G63442
TU72316 lncRNA downstream 6897 6159632 ~ 6159848 (+) True G63497
TU72321 lncRNA downstream 29610 6182345 ~ 6182679 (+) True G63502
TU72322 lncRNA downstream 30104 6182839 ~ 6183069 (+) True G63503
TU72323 lncRNA downstream 30944 6183679 ~ 6183908 (+) True G63504
TU72324 lncRNA downstream 31667 6184402 ~ 6184611 (+) True G63505
CI01000010_06116623_06143372.mRNA mRNA upstream 2247 6116524 ~ 6144062 (+) True CI01000010_06116623_06143372
CI01000010_06102935_06103344.mRNA mRNA upstream 42706 6102935 ~ 6103603 (+) False CI01000010_06102935_06103344
CI01000010_06093805_06101291.mRNA mRNA upstream 45018 6093805 ~ 6101291 (+) False CI01000010_06093805_06101291
CI01000010_06080203_06081963.mRNA mRNA upstream 64030 6080203 ~ 6082279 (+) True CI01000010_06080203_06081963
CI01000010_06074779_06076207.mRNA mRNA upstream 70029 6074427 ~ 6076280 (+) True CI01000010_06074779_06076207
CI01000010_06154873_06157770.mRNA mRNA downstream 2138 6154873 ~ 6158518 (+) True CI01000010_06154873_06157770
CI01000010_06166731_06172965.mRNA mRNA downstream 13996 6166731 ~ 6173143 (+) True CI01000010_06166731_06172965
CI01000010_06242353_06250653.mRNA mRNA downstream 89618 6242353 ~ 6251322 (+) True CI01000010_06242353_06250653
CI01000010_06285808_06296322.mRNA mRNA downstream 133073 6285808 ~ 6296474 (+) True CI01000010_06285808_06296322
CI01000010_06303382_06311970.mRNA mRNA downstream 150166 6302901 ~ 6312278 (+) True CI01000010_06303382_06311970
TU72237 other upstream 356322 5756953 ~ 5757934 (+) True G63420
TU72219 other upstream 429059 5707971 ~ 5717250 (+) False G63405
TU72215 other upstream 439224 5695445 ~ 5707085 (+) False G63403
TU72351 other downstream 221823 6374558 ~ 6374667 (+) False G63524
TU72352 other downstream 221823 6374558 ~ 6374667 (+) True G63524
TU72350 other downstream 233107 6424211 ~ 6424688 (+) True CI01000010_06399511_06426913
TU72416 other downstream 433193 6585928 ~ 6617806 (+) True G63572
TU74882 other downstream 2879812 9032547 ~ 9038005 (+) False G65803

Expression Profile